; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g20450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr6:15972270..15977163
RNA-Seq ExpressionMoc06g20450
SyntenyMoc06g20450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-1433.16Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+S GKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
RVW42505.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.5e-1533.68Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+SAGKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-1433.16Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+S GKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
RVW94144.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.5e-1533.68Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+SAGKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
VVB04180.1 unnamed protein product [Arabis nemorensis]3.5e-1435.94Show/hide
Query:  VRPLKRKGSESSN--GEVEYFYYHNKGHVKYFYKKFKEDF----EKENSTTNVVTEEERIKEFLTCVQRNIFIH--QWVVDTAASVHVASDRRWFSSLTV
        +R  K      SN    +E  Y HNK H+K    K K+D     ++E+    V   E++    L     NI  H   WVVD+ A+ H  S R +F++ T 
Subjt:  VRPLKRKGSESSN--GEVEYFYYHNKGHVKYFYKKFKEDF----EKENSTTNVVTEEERIKEFLTCVQRNIFIH--QWVVDTAASVHVASDRRWFSSLTV

Query:  GDYGSVKM---------------------------GMKVSP--RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKV
        G YGSVKM                           G+K  P  R NL+S GKLDD+G+NS F GG WKL R S ++A G K SS Y    KV
Subjt:  GDYGSVKM---------------------------GMKVSP--RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKV
TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-1533.16Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+S GKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1533.68Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+SAGKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-1533.16Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+S GKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1533.68Show/hide
Query:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG
        + S  S  +VE +Y H KGH+K   +K K       ++ EK+ + T VVT+ E     L  ++ ++ ++       WV+D+ AS HV S   +F+S + G
Subjt:  KGSESSNGEVEYFYYHNKGHVKYFYKKFK-------EDFEKENSTTNVVTEEERIKEFLTCVQRNIFIH------QWVVDTAASVHVASDRRWFSSLTVG

Query:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
        D+G+V+MG + VS                             R NL+SAGKLDD+GYN+ FS G WKL + S +VA G K  S+Y  + K+ +
Subjt:  DYGSVKMGMK-VSP----------------------------RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVR
A0A565BS43 Uncharacterized protein1.7e-1435.94Show/hide
Query:  VRPLKRKGSESSN--GEVEYFYYHNKGHVKYFYKKFKEDF----EKENSTTNVVTEEERIKEFLTCVQRNIFIH--QWVVDTAASVHVASDRRWFSSLTV
        +R  K      SN    +E  Y HNK H+K    K K+D     ++E+    V   E++    L     NI  H   WVVD+ A+ H  S R +F++ T 
Subjt:  VRPLKRKGSESSN--GEVEYFYYHNKGHVKYFYKKFKEDF----EKENSTTNVVTEEERIKEFLTCVQRNIFIH--QWVVDTAASVHVASDRRWFSSLTV

Query:  GDYGSVKM---------------------------GMKVSP--RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKV
        G YGSVKM                           G+K  P  R NL+S GKLDD+G+NS F GG WKL R S ++A G K SS Y    KV
Subjt:  GDYGSVKM---------------------------GMKVSP--RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKV
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-0827.11Show/hide
Query:  EKENSTTNVVTEEERIKEFLT----CVQRNIFIHQWVVDTAASVHVASDRRWFSSLTVGDYGSVKMG----MKVSP------------------------
        + +++T  +V   + +  F+     C+  +    +WVVDTAAS H    R  F     GD+G+VKMG     K++                         
Subjt:  EKENSTTNVVTEEERIKEFLT----CVQRNIFIHQWVVDTAASVHVASDRRWFSSLTVGDYGSVKMG----MKVSP------------------------

Query:  -RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVRGSERQRMHNNVAVD
         R NL+S   LD DGY S F+   W+L + S ++A G  R ++Y +  ++ +G E     + ++VD
Subjt:  -RFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVRGSERQRMHNNVAVD
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAATTGCTTGTAATCTCCCTACTCTTCTAAATGAACTACAAGTCATTGAGTCTATGATGAAAAACAAAGGCAAAAATGATGAAGCAGCCAACTCAAGCAAGTT
AAAGTGCGCACTTTCAATCTTGAGAACTGAGTCTGTAGCTTCAAACTCAGAGACTAACAATTGGAAGAGGAAAAGTAGTAAGGAGCAAAATACAACTGAAGTTGCTCCAA
AACAAAAGAGAATCAAGATAGAAAAAACTGTAAAAGGAGAGTGTTTTCGTTGCAACGAGGAAGGGCACTCGAAGAGAAACTGTCCAAAATACCTAGAAGAAAAGAAAAAC
CGTGAACCTAAAATTGGAAGTCGTGAGAGTATTTGGGCATCCGTTTTGGGAGATTCTTGTGGTGTTTCACAGGCGGCGACTCACGCGAAGGTTTGGCACCTCGATGTCGA
CTCTTCACCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGTAAGGGTAGTGAGAGTTCCAATGGGGAAGTGGAGTATTTTTACTACCACA
ATAAGGGACACGTTAAATACTTTTACAAGAAGTTCAAAGAAGATTTTGAGAAAGAGAACAGTACTACAAATGTTGTAACAGAAGAAGAACGGATTAAAGAGTTTCTGACT
TGTGTTCAGAGGAATATATTTATACACCAGTGGGTAGTAGACACTGCAGCATCAGTGCATGTTGCTTCAGACAGACGTTGGTTCTCATCTCTTACTGTAGGTGATTATGG
CTCAGTGAAAATGGGAATGAAAGTATCTCCAAGATTTAATTTGTTATCCGCAGGGAAGCTAGATGACGATGGCTACAACAGTGAATTTAGTGGGGGTTGTTGGAAACTCA
AGAGGGAATCCAGGATGGTGGCAACAGGCTACAAGAGATCTTCTGTTTATGTTTCTGAGTTTAAGGTTGTTAGAGGATCTGAGAGACAGAGGATGCACAATAATGTAGCT
GTAGATGGTTCAGGTTATCAGACGATGAGCAAGCTGATGAAGTCGCAAAGGCGAGATAGTGCATTGAGGGAGAAGATTACAATTAGTGCTAAAGTTAATGGTAATGTCTC
TAGAAAGGCAATAGACTTTGGTGGGAGCACCAAGTCATTAAAGGAATCTTCCTTCAGAGGTCGTTGTGTTCGATCGAGAAAAGAAGCGACATGGACAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAATTGCTTGTAATCTCCCTACTCTTCTAAATGAACTACAAGTCATTGAGTCTATGATGAAAAACAAAGGCAAAAATGATGAAGCAGCCAACTCAAGCAAGTT
AAAGTGCGCACTTTCAATCTTGAGAACTGAGTCTGTAGCTTCAAACTCAGAGACTAACAATTGGAAGAGGAAAAGTAGTAAGGAGCAAAATACAACTGAAGTTGCTCCAA
AACAAAAGAGAATCAAGATAGAAAAAACTGTAAAAGGAGAGTGTTTTCGTTGCAACGAGGAAGGGCACTCGAAGAGAAACTGTCCAAAATACCTAGAAGAAAAGAAAAAC
CGTGAACCTAAAATTGGAAGTCGTGAGAGTATTTGGGCATCCGTTTTGGGAGATTCTTGTGGTGTTTCACAGGCGGCGACTCACGCGAAGGTTTGGCACCTCGATGTCGA
CTCTTCACCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGTAAGGGTAGTGAGAGTTCCAATGGGGAAGTGGAGTATTTTTACTACCACA
ATAAGGGACACGTTAAATACTTTTACAAGAAGTTCAAAGAAGATTTTGAGAAAGAGAACAGTACTACAAATGTTGTAACAGAAGAAGAACGGATTAAAGAGTTTCTGACT
TGTGTTCAGAGGAATATATTTATACACCAGTGGGTAGTAGACACTGCAGCATCAGTGCATGTTGCTTCAGACAGACGTTGGTTCTCATCTCTTACTGTAGGTGATTATGG
CTCAGTGAAAATGGGAATGAAAGTATCTCCAAGATTTAATTTGTTATCCGCAGGGAAGCTAGATGACGATGGCTACAACAGTGAATTTAGTGGGGGTTGTTGGAAACTCA
AGAGGGAATCCAGGATGGTGGCAACAGGCTACAAGAGATCTTCTGTTTATGTTTCTGAGTTTAAGGTTGTTAGAGGATCTGAGAGACAGAGGATGCACAATAATGTAGCT
GTAGATGGTTCAGGTTATCAGACGATGAGCAAGCTGATGAAGTCGCAAAGGCGAGATAGTGCATTGAGGGAGAAGATTACAATTAGTGCTAAAGTTAATGGTAATGTCTC
TAGAAAGGCAATAGACTTTGGTGGGAGCACCAAGTCATTAAAGGAATCTTCCTTCAGAGGTCGTTGTGTTCGATCGAGAAAAGAAGCGACATGGACAAATTAG
Protein sequenceShow/hide protein sequence
MNKIACNLPTLLNELQVIESMMKNKGKNDEAANSSKLKCALSILRTESVASNSETNNWKRKSSKEQNTTEVAPKQKRIKIEKTVKGECFRCNEEGHSKRNCPKYLEEKKN
REPKIGSRESIWASVLGDSCGVSQAATHAKVWHLDVDSSPPGAVVCSKGWAVRPLKRKGSESSNGEVEYFYYHNKGHVKYFYKKFKEDFEKENSTTNVVTEEERIKEFLT
CVQRNIFIHQWVVDTAASVHVASDRRWFSSLTVGDYGSVKMGMKVSPRFNLLSAGKLDDDGYNSEFSGGCWKLKRESRMVATGYKRSSVYVSEFKVVRGSERQRMHNNVA
VDGSGYQTMSKLMKSQRRDSALREKITISAKVNGNVSRKAIDFGGSTKSLKESSFRGRCVRSRKEATWTN