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Moc06g20460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:15981854..15984911
RNA-Seq ExpressionMoc06g20460
SyntenyMoc06g20460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152029.1 uncharacterized protein LOC111019838 [Momordica charantia]2.3e-1842.76Show/hide
Query:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH
        VVRRVLVDGGAS NILSL TYL LGW +SQLK+  TPLV                                                       VPST H
Subjt:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH

Query:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSG
        Q++KYS P+GVGI++GEQ ASRECYA+ LKG+  CA+ + A+  G
Subjt:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSG

XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]3.3e-2039.2Show/hide
Query:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH
        VVRRVLVDGGAS NILSL TYLALGW +SQLK+ PTPLV                                                       +PST H
Subjt:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH

Query:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEKK
        Q++KYS PNGVG ++GEQ ASRECYA+ LKGT  CA+    +  G    +       +    +ELE + L + EK+
Subjt:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEKK

XP_022152367.1 uncharacterized protein LOC111020111 [Momordica charantia]8.6e-2129.94Show/hide
Query:  DHESR-KSTHDNRSRQE-RTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSDRD-------------------
        D +SR K +  + SR E R +++   R R ++ Y P  +P+S+ILANIE S +  +L++P K +     R K K+ R  RD                   
Subjt:  DHESR-KSTHDNRSRQE-RTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSDRD-------------------

Query:  ------------------------DQDKSPSPKRRG-----------VDGKKP-------------------------------VVRRVLVDGGASINIL
                                ++ +S +P RR              G+KP                               +VRRVLVDGGAS NIL
Subjt:  ------------------------DQDKSPSPKRRG-----------VDGKKP-------------------------------VVRRVLVDGGASINIL

Query:  SLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYHQMMKYSIPNGVGIIKG
        SL TYLALGW +SQLK+ PTPLV                                                       VPST HQ++KYS PNGVG ++G
Subjt:  SLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYHQMMKYSIPNGVGIIKG

Query:  EQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKL
        EQK SRECYA+TLKG+  C +         A+ D+P  E G R     +E+++L
Subjt:  EQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKL

XP_022156175.1 uncharacterized protein LOC111023128 [Momordica charantia]5.9e-3842.14Show/hide
Query:  KKDSCSSRAKRKFDRSDRDDQDKSPSPKRRGVDGKKPV--------------------------------------------------------------
        KKDSCSS+ KRKFDR++ DDQDKSPS K+     K+PV                                                              
Subjt:  KKDSCSSRAKRKFDRSDRDDQDKSPSPKRRGVDGKKPV--------------------------------------------------------------

Query:  ------VRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPL-------------------------------------------------------VV
              V+ VL+DG AS NILSLSTYLALGWEKSQLKRCPTPL                                                       VV
Subjt:  ------VRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPL-------------------------------------------------------VV

Query:  PSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEK
        PSTYHQ+MKY  P GV IIKGEQKASRECYAT LKGTRT AVI G TSS +   D+ +NELGW TSKQEL+QIKLG++EK
Subjt:  PSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEK

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]2.1e-1928.87Show/hide
Query:  KSTHDNRSRQERTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSD-RDDQDKSPSPKRR--------------
        K +  +   + R  +    R R ++ + P  +P+S+IL NIE+S +  +L++P K + +   R+K K   ++ ++++ +S +P RR              
Subjt:  KSTHDNRSRQERTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSD-RDDQDKSPSPKRR--------------

Query:  --GVDGKK--------------------------------------------------PVVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV--
          G  G K                                                   VVRRVLVDGGAS NILSL TYLALGW +SQLKR PTPLV  
Subjt:  --GVDGKK--------------------------------------------------PVVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV--

Query:  -----------------------------------------------------VPSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGA
                                                             +PST HQ++KYS PNGVG ++GEQ  SRECYA  LKG+  CA+    
Subjt:  -----------------------------------------------------VPSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGA

Query:  TSSGMASDDEPSNELGWRTSKQELEQIKLGANEKKN
          +     D P  E    T  +ELE + L + EK++
Subjt:  TSSGMASDDEPSNELGWRTSKQELEQIKLGANEKKN

TrEMBL top hitse value%identityAlignment
A0A6J1DD03 uncharacterized protein LOC1110198991.6e-2039.2Show/hide
Query:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH
        VVRRVLVDGGAS NILSL TYLALGW +SQLK+ PTPLV                                                       +PST H
Subjt:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH

Query:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEKK
        Q++KYS PNGVG ++GEQ ASRECYA+ LKGT  CA+    +  G    +       +    +ELE + L + EK+
Subjt:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEKK

A0A6J1DET8 uncharacterized protein LOC1110198381.1e-1842.76Show/hide
Query:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH
        VVRRVLVDGGAS NILSL TYL LGW +SQLK+  TPLV                                                       VPST H
Subjt:  VVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYH

Query:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSG
        Q++KYS P+GVGI++GEQ ASRECYA+ LKG+  CA+ + A+  G
Subjt:  QMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSG

A0A6J1DG07 uncharacterized protein LOC1110201114.2e-2129.94Show/hide
Query:  DHESR-KSTHDNRSRQE-RTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSDRD-------------------
        D +SR K +  + SR E R +++   R R ++ Y P  +P+S+ILANIE S +  +L++P K +     R K K+ R  RD                   
Subjt:  DHESR-KSTHDNRSRQE-RTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSDRD-------------------

Query:  ------------------------DQDKSPSPKRRG-----------VDGKKP-------------------------------VVRRVLVDGGASINIL
                                ++ +S +P RR              G+KP                               +VRRVLVDGGAS NIL
Subjt:  ------------------------DQDKSPSPKRRG-----------VDGKKP-------------------------------VVRRVLVDGGASINIL

Query:  SLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYHQMMKYSIPNGVGIIKG
        SL TYLALGW +SQLK+ PTPLV                                                       VPST HQ++KYS PNGVG ++G
Subjt:  SLSTYLALGWEKSQLKRCPTPLV-------------------------------------------------------VPSTYHQMMKYSIPNGVGIIKG

Query:  EQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKL
        EQK SRECYA+TLKG+  C +         A+ D+P  E G R     +E+++L
Subjt:  EQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKL

A0A6J1DPJ9 uncharacterized protein LOC1110231282.9e-3842.14Show/hide
Query:  KKDSCSSRAKRKFDRSDRDDQDKSPSPKRRGVDGKKPV--------------------------------------------------------------
        KKDSCSS+ KRKFDR++ DDQDKSPS K+     K+PV                                                              
Subjt:  KKDSCSSRAKRKFDRSDRDDQDKSPSPKRRGVDGKKPV--------------------------------------------------------------

Query:  ------VRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPL-------------------------------------------------------VV
              V+ VL+DG AS NILSLSTYLALGWEKSQLKRCPTPL                                                       VV
Subjt:  ------VRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPL-------------------------------------------------------VV

Query:  PSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEK
        PSTYHQ+MKY  P GV IIKGEQKASRECYAT LKGTRT AVI G TSS +   D+ +NELGW TSKQEL+QIKLG++EK
Subjt:  PSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEK

A0A6J1DYW5 uncharacterized protein LOC1110243321.0e-1928.87Show/hide
Query:  KSTHDNRSRQERTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSD-RDDQDKSPSPKRR--------------
        K +  +   + R  +    R R ++ + P  +P+S+IL NIE+S +  +L++P K + +   R+K K   ++ ++++ +S +P RR              
Subjt:  KSTHDNRSRQERTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRK-KDSCSSRAKRKFDRSD-RDDQDKSPSPKRR--------------

Query:  --GVDGKK--------------------------------------------------PVVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV--
          G  G K                                                   VVRRVLVDGGAS NILSL TYLALGW +SQLKR PTPLV  
Subjt:  --GVDGKK--------------------------------------------------PVVRRVLVDGGASINILSLSTYLALGWEKSQLKRCPTPLV--

Query:  -----------------------------------------------------VPSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGA
                                                             +PST HQ++KYS PNGVG ++GEQ  SRECYA  LKG+  CA+    
Subjt:  -----------------------------------------------------VPSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGA

Query:  TSSGMASDDEPSNELGWRTSKQELEQIKLGANEKKN
          +     D P  E    T  +ELE + L + EK++
Subjt:  TSSGMASDDEPSNELGWRTSKQELEQIKLGANEKKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGCGATCATGAGTCAAGAAAGTCTACCCACGATAACCGATCGCGACAAGAACGAACAGTGCAAGTTCATGATCGCCGTTTAAGGGAGTTCGATTGCTACATCCC
ACTCAACGTCCCATTATCGAAAATCCTTGCCAACATTGAGAATAGCAACTTGAATACAATACTGGAAAAACCGAGGAAGAAGGATTCCTGTTCTTCCCGGGCTAAAAGAA
AATTTGACCGATCAGATCGTGATGATCAAGACAAGTCTCCCTCACCTAAGAGAAGAGGAGTAGACGGAAAAAAGCCCGTGGTCCGGCGAGTACTTGTTGATGGAGGGGCC
TCCATCAACATACTCTCTCTTTCAACTTATCTTGCTCTAGGATGGGAGAAGTCGCAATTGAAACGATGCCCTACACCCCTGGTTGTACCCTCTACTTACCACCAAATGAT
GAAATACTCTATCCCCAATGGCGTAGGTATTATCAAAGGCGAGCAGAAAGCTTCGAGAGAATGCTATGCCACAACACTGAAGGGTACCCGAACTTGTGCAGTGATTAATG
GAGCTACATCCTCTGGGATGGCTTCAGACGATGAGCCCAGCAACGAACTCGGATGGAGAACATCGAAGCAAGAACTCGAGCAGATTAAGCTTGGAGCTAATGAGAAGAAG
AACATTGTTCGGTTGAAACACGACCTTGTTGTTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGCGATCATGAGTCAAGAAAGTCTACCCACGATAACCGATCGCGACAAGAACGAACAGTGCAAGTTCATGATCGCCGTTTAAGGGAGTTCGATTGCTACATCCC
ACTCAACGTCCCATTATCGAAAATCCTTGCCAACATTGAGAATAGCAACTTGAATACAATACTGGAAAAACCGAGGAAGAAGGATTCCTGTTCTTCCCGGGCTAAAAGAA
AATTTGACCGATCAGATCGTGATGATCAAGACAAGTCTCCCTCACCTAAGAGAAGAGGAGTAGACGGAAAAAAGCCCGTGGTCCGGCGAGTACTTGTTGATGGAGGGGCC
TCCATCAACATACTCTCTCTTTCAACTTATCTTGCTCTAGGATGGGAGAAGTCGCAATTGAAACGATGCCCTACACCCCTGGTTGTACCCTCTACTTACCACCAAATGAT
GAAATACTCTATCCCCAATGGCGTAGGTATTATCAAAGGCGAGCAGAAAGCTTCGAGAGAATGCTATGCCACAACACTGAAGGGTACCCGAACTTGTGCAGTGATTAATG
GAGCTACATCCTCTGGGATGGCTTCAGACGATGAGCCCAGCAACGAACTCGGATGGAGAACATCGAAGCAAGAACTCGAGCAGATTAAGCTTGGAGCTAATGAGAAGAAG
AACATTGTTCGGTTGAAACACGACCTTGTTGTTGGTTAG
Protein sequenceShow/hide protein sequence
MSCDHESRKSTHDNRSRQERTVQVHDRRLREFDCYIPLNVPLSKILANIENSNLNTILEKPRKKDSCSSRAKRKFDRSDRDDQDKSPSPKRRGVDGKKPVVRRVLVDGGA
SINILSLSTYLALGWEKSQLKRCPTPLVVPSTYHQMMKYSIPNGVGIIKGEQKASRECYATTLKGTRTCAVINGATSSGMASDDEPSNELGWRTSKQELEQIKLGANEKK
NIVRLKHDLVVG