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Moc06g20630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr6:16070378..16073798
RNA-Seq ExpressionMoc06g20630
SyntenyMoc06g20630
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012472404.1 PREDICTED: uncharacterized protein LOC105789579 [Gossypium raimondii]3.2e-0638Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   +  T++ ++ E  IT+W E+K ++RR+F+P     +   KL+NL Q  KSVE YY EM   + + NV ED E  + RF   LN E
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

XP_017617594.1 PREDICTED: uncharacterized protein LOC108462111 [Gossypium arboreum]1.4e-0635.04Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ +DRE  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   +   +V ED E  + RF   LN +
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]1.9e-0642.35Show/hide
Query:  KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        K+ + + ++ E+ I SW E K ++RR+FVP     K+  KL+ LRQ  KSVE YY EM +L+ + ++ ED E ++ RF N LN E
Subjt:  KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

XP_040938025.1 uncharacterized protein LOC107956428 [Gossypium hirsutum]1.4e-0634.19Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ ++ E  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   + + +V ED E  + RF  RLN +
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

XP_040940073.1 uncharacterized protein LOC107943567 [Gossypium hirsutum]1.9e-0635.04Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ ++ E  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   + + +V ED E  + RF  RLN E
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

TrEMBL top hitse value%identityAlignment
A0A1U8MYQ5 uncharacterized protein LOC1079427212.0e-0635.04Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ ++ E  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   + + NV ED E  + RF   LN E
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

A0A1U8N189 uncharacterized protein LOC1079435679.2e-0735.04Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ ++ E  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   + + +V ED E  + RF  RLN E
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

A0A1U8PBA0 uncharacterized protein LOC1079564287.0e-0734.19Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ ++ E  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   + + +V ED E  + RF  RLN +
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252689.2e-0742.35Show/hide
Query:  KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        K+ + + ++ E+ I SW E K ++RR+FVP     K+  KL+ LRQ  KSVE YY EM +L+ + ++ ED E ++ RF N LN E
Subjt:  KVTTAKEKDRESRITSWRELKPIIRRQFVP-----KSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

A0A6P4MA28 uncharacterized protein LOC1084621117.0e-0735.04Show/hide
Query:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE
        +++IE S+Y ++   ++TT++ +DRE  I++W E+K ++RR+F+P         KL+NL Q  KSVE YY EM   +   +V ED E  + RF   LN +
Subjt:  VSSIEHSEYCLL---KVTTAKEKDRESRITSWRELKPIIRRQFVPKSL-----VKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEETIVDRFYNRLNGE

Query:  DLVVDDCRRRRTAADVV
           V + +      D+V
Subjt:  DLVVDDCRRRRTAADVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCGTACATGCATGCATGCATATAGCTCATGTGCTCCAATCGTTCACTCGTATGCTGCCTCAACCGCACGTGCCATCGCTCACACATGCACGTGCCCCTTGCCGTG
CATCCGCACACGCCCGTATGCCCACTCGCTTCAATTGCTTGCTCGCATGCTGCCTTGGCCATGCGCACCCTCCAGCCGCCTGCCTTTACCATCGCCAACGCATGTGTTAC
CTGTCGCCCGTGTGCCCAAACTCACACGCAAGCCCCAGTGTCCGCCCATGCGCCCACCCCCAATGCCAGCCTCCTTGCGCATGCACCACAGCCCTCATGGGTGCCCCCAC
CAACTTGATGCTGCCACCCCCTTGACACCTCTGTTTTCGTATTTTACCCCTGGAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGTGTTTCTAGCATTGAGCATAG
TGAGTATTGTCTGCTCAAAGTAACGACTGCAAAGGAAAAGGATCGAGAAAGTCGAATCACCTCATGGAGAGAACTCAAACCCATAATAAGGAGACAATTTGTTCCTAAGT
CATTAGTCAAGTTGAAAAACTTGAGACAAAGGGACAAAAGTGTTGAAGCTTACTATGACGAGATGTGCTCATTGCTTGAGAAGTTTAACGTATATGAAGATGAGGAAACC
ATTGTGGATCGATTCTACAATAGACTCAATGGAGAAGATCTGGTGGTGGACGACTGTAGACGGCGACGAACGGCAGCAGATGTGGTGTTGGACGGCAGCAGACAGAGACG
AACGGCAGTAGATTTGGAGCGGATGGCAGCGAACGACAACAAATCTGGCAAGGACAGCAACAAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCGTACATGCATGCATGCATATAGCTCATGTGCTCCAATCGTTCACTCGTATGCTGCCTCAACCGCACGTGCCATCGCTCACACATGCACGTGCCCCTTGCCGTG
CATCCGCACACGCCCGTATGCCCACTCGCTTCAATTGCTTGCTCGCATGCTGCCTTGGCCATGCGCACCCTCCAGCCGCCTGCCTTTACCATCGCCAACGCATGTGTTAC
CTGTCGCCCGTGTGCCCAAACTCACACGCAAGCCCCAGTGTCCGCCCATGCGCCCACCCCCAATGCCAGCCTCCTTGCGCATGCACCACAGCCCTCATGGGTGCCCCCAC
CAACTTGATGCTGCCACCCCCTTGACACCTCTGTTTTCGTATTTTACCCCTGGAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGTGTTTCTAGCATTGAGCATAG
TGAGTATTGTCTGCTCAAAGTAACGACTGCAAAGGAAAAGGATCGAGAAAGTCGAATCACCTCATGGAGAGAACTCAAACCCATAATAAGGAGACAATTTGTTCCTAAGT
CATTAGTCAAGTTGAAAAACTTGAGACAAAGGGACAAAAGTGTTGAAGCTTACTATGACGAGATGTGCTCATTGCTTGAGAAGTTTAACGTATATGAAGATGAGGAAACC
ATTGTGGATCGATTCTACAATAGACTCAATGGAGAAGATCTGGTGGTGGACGACTGTAGACGGCGACGAACGGCAGCAGATGTGGTGTTGGACGGCAGCAGACAGAGACG
AACGGCAGTAGATTTGGAGCGGATGGCAGCGAACGACAACAAATCTGGCAAGGACAGCAACAAACTATGA
Protein sequenceShow/hide protein sequence
MPRTCMHAYSSCAPIVHSYAASTARAIAHTCTCPLPCIRTRPYAHSLQLLARMLPWPCAPSSRLPLPSPTHVLPVARVPKLTRKPQCPPMRPPPMPASLRMHHSPHGCPH
QLDAATPLTPLFSYFTPGACLFDWSSNSWSVSSIEHSEYCLLKVTTAKEKDRESRITSWRELKPIIRRQFVPKSLVKLKNLRQRDKSVEAYYDEMCSLLEKFNVYEDEET
IVDRFYNRLNGEDLVVDDCRRRRTAADVVLDGSRQRRTAVDLERMAANDNKSGKDSNKL