; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g20680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationchr6:16112898..16145524
RNA-Seq ExpressionMoc06g20680
SyntenyMoc06g20680
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0044267 - cellular protein metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0140096 - catalytic activity, acting on a protein (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044949.1 hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa]1.2e-2471.26Show/hide
Query:  IVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL
        ++ KFKIEKFN TNFSLWKLKMK I RKDNCL    K+P E+T D KWNEMD NA+AN+HL LVD VLS I+E K AKEIWDHL KL
Subjt:  IVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL

KAA0061179.1 Gag-Pol [Cucumis melo var. makuwa]2.5e-2574.7Show/hide
Query:  FKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL
        F+IEKFNETNFSLWKLKMKV+LRKDNCL    K+P E+  D KWNEMD NA AN+HL L D VLS I+E KTAKEIWDHLTKL
Subjt:  FKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL

TYK06685.1 Gag-Pol [Cucumis melo var. makuwa]5.4e-2870.41Show/hide
Query:  MIEVIVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKLSAWVRAA
        MIEV+ AKF+IEKFNETNFSLWKLKMK +LRKDNCL    K+P ++T D KWNEMD NA+AN+HL L D VLS I+E KT KEIWDHLTKL   V AA
Subjt:  MIEVIVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKLSAWVRAA

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]3.2e-2864.04Show/hide
Query:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW
        P +PPV +F+L+WFGGNIPKH FIAWLA+ D L TRD+L +WD SV  +C+FC G E  D+LFFECPFS EVW+ M+ WAGS  +ISYW
Subjt:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]3.7e-3745.51Show/hide
Query:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW-----------
        P +PPV+YF LLWFGGNIPKH FI+WLA+ D L TR++LRQW++ VP+TC+FCAGLE +DHLF +CP+SR VWAGM+ WAGS H++SYW           
Subjt:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW-----------

Query:  -----------------------ECNSKAHGGVGQSPSALHRIVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTK
                               E N + H G G+S S L R++KAEV A   GF   R + +  +W+ L  + +K +
Subjt:  -----------------------ECNSKAHGGVGQSPSALHRIVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTK

TrEMBL top hitse value%identityAlignment
A0A5A7TUN0 Uncharacterized protein6.0e-2571.26Show/hide
Query:  IVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL
        ++ KFKIEKFN TNFSLWKLKMK I RKDNCL    K+P E+T D KWNEMD NA+AN+HL LVD VLS I+E K AKEIWDHL KL
Subjt:  IVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL

A0A5A7V644 Gag-Pol1.2e-2574.7Show/hide
Query:  FKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL
        F+IEKFNETNFSLWKLKMKV+LRKDNCL    K+P E+  D KWNEMD NA AN+HL L D VLS I+E KTAKEIWDHLTKL
Subjt:  FKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKL

A0A5D3C5M6 Gag-Pol2.6e-2870.41Show/hide
Query:  MIEVIVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKLSAWVRAA
        MIEV+ AKF+IEKFNETNFSLWKLKMK +LRKDNCL    K+P ++T D KWNEMD NA+AN+HL L D VLS I+E KT KEIWDHLTKL   V AA
Subjt:  MIEVIVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHD-KWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKLSAWVRAA

A0A6J1DTG0 uncharacterized protein LOC1110241651.5e-2864.04Show/hide
Query:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW
        P +PPV +F+L+WFGGNIPKH FIAWLA+ D L TRD+L +WD SV  +C+FC G E  D+LFFECPFS EVW+ M+ WAGS  +ISYW
Subjt:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW

A0A6J1E271 uncharacterized protein LOC1110253241.8e-3745.51Show/hide
Query:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW-----------
        P +PPV+YF LLWFGGNIPKH FI+WLA+ D L TR++LRQW++ VP+TC+FCAGLE +DHLF +CP+SR VWAGM+ WAGS H++SYW           
Subjt:  PCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYW-----------

Query:  -----------------------ECNSKAHGGVGQSPSALHRIVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTK
                               E N + H G G+S S L R++KAEV A   GF   R + +  +W+ L  + +K +
Subjt:  -----------------------ECNSKAHGGVGQSPSALHRIVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers1.4e-0548.72Show/hide
Query:  DQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREVWA
        D+   W   VPS C+ C  L E + H+FF+CPFS EVW+
Subjt:  DQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREVWA

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.1e-1443.59Show/hide
Query:  LGCHPCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFC-AGLEPQDHLFFECPFSREVW
        L  +P    V +F  +WF G IPKH FIAW+ +   L T+D++  W    P  C+FC    E + HLFF+C F+REVW
Subjt:  LGCHPCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFC-AGLEPQDHLFFECPFSREVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-1227.15Show/hide
Query:  VTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREV-WAGMLPWAGSLHQISYWECNSKAHGGVGQSP
        V ++  +WF    PK+  +AW+A+ + L T D++  W++   S+C+ C  L E +DHLFF CP+S EV +     +  +LH + + E N + HG V Q+ 
Subjt:  VTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREV-WAGMLPWAGSLHQISYWECNSKAHGGVGQSP

Query:  SALHR-----IVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTKQTAQT
        + + +     +VK   G L   +    ++ +  +  +  K +++ ++ +Q+
Subjt:  SALHR-----IVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTKQTAQT

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.2e-1341.89Show/hide
Query:  HPCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREV
        +P    V +   +WF G IPKH FI+W+ +   L TRD+L  W   VPS C+ C    E + HLFF+C F+ E+
Subjt:  HPCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGL-EPQDHLFFECPFSREV

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-1140.85Show/hide
Query:  PPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCA-GLEPQDHLFFECPFSREVW
        P V +  ++WF   IP+   I W++  + L TRD+LR W  ++PS+ + C+ G E   HLFFEC FS  +W
Subjt:  PPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCA-GLEPQDHLFFECPFSREVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGAAGTAATAGTGGCAAAGTTCAAGATTGAGAAGTTCAATGAGACTAATTTCTCGTTGTGGAAATTAAAGATGAAAGTTATCTTGAGAAAAGATAATTGCCTTGC
AACTACCAGTAAAAAGCCAACGGAAGTTACACATGACAAGTGGAATGAGATGGATGAGAATGCTATAGCAAATCTTCATCTGACACTAGTAGATGAAGTATTGTCAAGAA
TAAAGGAGATGAAAACCGCAAAGGAGATTTGGGATCATCTCACAAAATTATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATTTCAGGGATT
GTTATTTCGATTCTTGCTCACTTCCGCTGCACATGTATGTATTTTCTCCATCAGACGGATCTGCGACAGCGTAGCGGATCTGCGACGGTGCACATCGCAGCTCAAGCGGA
CATATCTACTCACGTCGGATGGACCTGCTTCACTGGTGATGACTCACGTGAGTCACGGGCTACTGCGGTGGTGACAACGCCAGACGAGATTCACGGATTGCTACAGTTTA
ATTCGAAAAGGGAGGTAGATTTAAGAGAGAAGAAGATGGATGAGAGAAGAAGAGGCTTAACTTGGCTTTCTATTCCTTATTTTGCTTTGCTGTGGTTTGGGGGAACATCC
CTAAGCACTCTTTCATTGCTTTCCTTTAAGCAGGGAGGCTTGGGCTGCCATCCATGCCAGCCTCCTGTTACTTATTTTGCTTTGCTGTGGTTTGGAGGGAACATCCCTAA
GCACCGTTTCATTGCTTGGTTGGCGGTTTCAGATTATCTTCTTACGCGGGATCAGCTTCGCCAATGGGACTCATCGGTTCCTTCTACCTGCATGTTTTGTGCTGGTTTAG
AGCCTCAGGATCATCTTTTCTTTGAGTGCCCTTTTAGCAGGGAGGTTTGGGCTGGCATGCTTCCGTGGGCTGGATCGTTGCATCAGATTTCCTACTGGGAGTGTAACTCG
AAGGCTCATGGTGGTGTGGGACAATCGCCTTCTGCTCTGCATAGGATCGTTAAGGCTGAGGTTGGTGCCTTGATCTTTGGCTTCCGGGTCGCTCGAAAGTCATTCGTGGC
GCAGATTTGGCGAAAATTGCAGAAAACAACGAAGAAGACGAAGCAAACTGCGCAGACAGGGCCATGGCGCTGCGGGACAGCAGACAGCGCCACGGCGCTGCACTGTAGCG
CCGCGGTGCTGTACAACTCCATGGCGCCATGCCAGGGCACGGCGGCGCTGCCCTTAGGCGCCGAGGAGCTGTCCCGGGTGTTTTCGACGCGGTTCCGAGGCTCCGGTTCG
CAGTTCGAGGACGGATGCAATCAGTCTCTTGATCAACACGTTTCAACTCATCCTCAAGGTCGTCCTTCCATTCGAGCCAAGTTCGCAAGCTTGGTCATTTTTGTGATCAA
TCATTCATTTTCGGTTAAATCAAACCCGATCCAAGTTGAGGTCGAAGCCTGTATTAAAGCCAAATCCATTGCATTCTCTCTTTTGGTTAAATCGAGCCTGATCCAAGTCG
AGGTCAAAGTCTATGTTAAAGCCAGGTCCGTTGCATTTTTTCTTTTGATTAAATCAAACCCAATCCAAGTTGAGGTTGAAGCCTGTGTTAAAGTCAGATCTAGGTCGAAG
CCTGTGTTAAAGCCAGTCGAGGTCGAAGACTGTATTAGAGCAAGGTATGTTGCATCTTATCTTCGACTAAATCGAACCCGATCCAAGTCAAGGTCGAAGCCTGTGTTAAA
GCCAGCAGATCTTGTGGTCGACGCTGACAAGAACTGGACCGCAAGACGAACCGACGGATTGGTTTGGTTGAGGCGAAACGGGGCAATGTTCGATGTTGTAGTTGAGTTTC
GGCGGCAACTGGCCGGAACGGGACAGCATCCGGGCGACGTGTGGACTGAAACTTCTTGGCAGCGACTGGCAGACAACGACAGCAGATGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGAAGTAATAGTGGCAAAGTTCAAGATTGAGAAGTTCAATGAGACTAATTTCTCGTTGTGGAAATTAAAGATGAAAGTTATCTTGAGAAAAGATAATTGCCTTGC
AACTACCAGTAAAAAGCCAACGGAAGTTACACATGACAAGTGGAATGAGATGGATGAGAATGCTATAGCAAATCTTCATCTGACACTAGTAGATGAAGTATTGTCAAGAA
TAAAGGAGATGAAAACCGCAAAGGAGATTTGGGATCATCTCACAAAATTATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATTTCAGGGATT
GTTATTTCGATTCTTGCTCACTTCCGCTGCACATGTATGTATTTTCTCCATCAGACGGATCTGCGACAGCGTAGCGGATCTGCGACGGTGCACATCGCAGCTCAAGCGGA
CATATCTACTCACGTCGGATGGACCTGCTTCACTGGTGATGACTCACGTGAGTCACGGGCTACTGCGGTGGTGACAACGCCAGACGAGATTCACGGATTGCTACAGTTTA
ATTCGAAAAGGGAGGTAGATTTAAGAGAGAAGAAGATGGATGAGAGAAGAAGAGGCTTAACTTGGCTTTCTATTCCTTATTTTGCTTTGCTGTGGTTTGGGGGAACATCC
CTAAGCACTCTTTCATTGCTTTCCTTTAAGCAGGGAGGCTTGGGCTGCCATCCATGCCAGCCTCCTGTTACTTATTTTGCTTTGCTGTGGTTTGGAGGGAACATCCCTAA
GCACCGTTTCATTGCTTGGTTGGCGGTTTCAGATTATCTTCTTACGCGGGATCAGCTTCGCCAATGGGACTCATCGGTTCCTTCTACCTGCATGTTTTGTGCTGGTTTAG
AGCCTCAGGATCATCTTTTCTTTGAGTGCCCTTTTAGCAGGGAGGTTTGGGCTGGCATGCTTCCGTGGGCTGGATCGTTGCATCAGATTTCCTACTGGGAGTGTAACTCG
AAGGCTCATGGTGGTGTGGGACAATCGCCTTCTGCTCTGCATAGGATCGTTAAGGCTGAGGTTGGTGCCTTGATCTTTGGCTTCCGGGTCGCTCGAAAGTCATTCGTGGC
GCAGATTTGGCGAAAATTGCAGAAAACAACGAAGAAGACGAAGCAAACTGCGCAGACAGGGCCATGGCGCTGCGGGACAGCAGACAGCGCCACGGCGCTGCACTGTAGCG
CCGCGGTGCTGTACAACTCCATGGCGCCATGCCAGGGCACGGCGGCGCTGCCCTTAGGCGCCGAGGAGCTGTCCCGGGTGTTTTCGACGCGGTTCCGAGGCTCCGGTTCG
CAGTTCGAGGACGGATGCAATCAGTCTCTTGATCAACACGTTTCAACTCATCCTCAAGGTCGTCCTTCCATTCGAGCCAAGTTCGCAAGCTTGGTCATTTTTGTGATCAA
TCATTCATTTTCGGTTAAATCAAACCCGATCCAAGTTGAGGTCGAAGCCTGTATTAAAGCCAAATCCATTGCATTCTCTCTTTTGGTTAAATCGAGCCTGATCCAAGTCG
AGGTCAAAGTCTATGTTAAAGCCAGGTCCGTTGCATTTTTTCTTTTGATTAAATCAAACCCAATCCAAGTTGAGGTTGAAGCCTGTGTTAAAGTCAGATCTAGGTCGAAG
CCTGTGTTAAAGCCAGTCGAGGTCGAAGACTGTATTAGAGCAAGGTATGTTGCATCTTATCTTCGACTAAATCGAACCCGATCCAAGTCAAGGTCGAAGCCTGTGTTAAA
GCCAGCAGATCTTGTGGTCGACGCTGACAAGAACTGGACCGCAAGACGAACCGACGGATTGGTTTGGTTGAGGCGAAACGGGGCAATGTTCGATGTTGTAGTTGAGTTTC
GGCGGCAACTGGCCGGAACGGGACAGCATCCGGGCGACGTGTGGACTGAAACTTCTTGGCAGCGACTGGCAGACAACGACAGCAGATGGAGATGA
Protein sequenceShow/hide protein sequence
MIEVIVAKFKIEKFNETNFSLWKLKMKVILRKDNCLATTSKKPTEVTHDKWNEMDENAIANLHLTLVDEVLSRIKEMKTAKEIWDHLTKLSAWVRAAQQRWLNKPPISGI
VISILAHFRCTCMYFLHQTDLRQRSGSATVHIAAQADISTHVGWTCFTGDDSRESRATAVVTTPDEIHGLLQFNSKREVDLREKKMDERRRGLTWLSIPYFALLWFGGTS
LSTLSLLSFKQGGLGCHPCQPPVTYFALLWFGGNIPKHRFIAWLAVSDYLLTRDQLRQWDSSVPSTCMFCAGLEPQDHLFFECPFSREVWAGMLPWAGSLHQISYWECNS
KAHGGVGQSPSALHRIVKAEVGALIFGFRVARKSFVAQIWRKLQKTTKKTKQTAQTGPWRCGTADSATALHCSAAVLYNSMAPCQGTAALPLGAEELSRVFSTRFRGSGS
QFEDGCNQSLDQHVSTHPQGRPSIRAKFASLVIFVINHSFSVKSNPIQVEVEACIKAKSIAFSLLVKSSLIQVEVKVYVKARSVAFFLLIKSNPIQVEVEACVKVRSRSK
PVLKPVEVEDCIRARYVASYLRLNRTRSKSRSKPVLKPADLVVDADKNWTARRTDGLVWLRRNGAMFDVVVEFRRQLAGTGQHPGDVWTETSWQRLADNDSRWR