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Moc06g20730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g20730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:16167943..16171110
RNA-Seq ExpressionMoc06g20730
SyntenyMoc06g20730
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]1.5e-4094.68Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYET+LARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVR  ALYRRGFSLPLLRCLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]5.0e-0788.89Show/hide
Query:  RDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQLA
        RDGTLEFEADLPR+E AAPTEELELVPLLSPEKQ++
Subjt:  RDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQLA

XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]2.0e-4091.49Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYETDLARSVPVEILDN SI EPDLMEIGAPESSWM+PI DFI+GNSPQDPKERRKLARRAARFV+RDGALYRRGFSLPLL+CLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

XP_022143486.1 uncharacterized protein LOC111013362 [Momordica charantia]7.4e-4397.87Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYETDLARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]9.0e-4141.43Show/hide
Query:  MVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ---------------------------------
        +VRGEQ  SRECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEELELVPLLSPE+Q                                 
Subjt:  MVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ---------------------------------

Query:  ----------------------------------------------------------------------------------------LASAYETDLARS
                                                                                                LASAYETDLARS
Subjt:  ----------------------------------------------------------------------------------------LASAYETDLARS

Query:  VPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG
        VPVEILDN SI EPDLME+  P  SWMD I +FI+GN PQDPKE +K+AR+ A+F++RDGALYR+GFSLPLL+C+TPE+G
Subjt:  VPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG

XP_022158219.1 protein NYNRIN-like [Momordica charantia]1.9e-6266.82Show/hide
Query:  VRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-------------------------------------
        VRGEQTASRECYASALKGSSVCALE  A  + TLEF+ADLPR+EF+APTEELELVPLLS EKQ                                     
Subjt:  VRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-------------------------------------

Query:  ---------------------LASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGF
                             LASAYETDLARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLA R ARFVVRDGALYRRGF
Subjt:  ---------------------LASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGF

Query:  SLPLLRCLTPEEGL
        SLPLLRCLTPEEGL
Subjt:  SLPLLRCLTPEEGL

TrEMBL top hitse value%identityAlignment
A0A6J1C617 Ribonuclease H7.4e-4194.68Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYET+LARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVR  ALYRRGFSLPLLRCLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

A0A6J1C617 Ribonuclease H2.4e-0788.89Show/hide
Query:  RDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQLA
        RDGTLEFEADLPR+E AAPTEELELVPLLSPEKQ++
Subjt:  RDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQLA

A0A6J1C617 Ribonuclease H9.7e-4191.49Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYETDLARSVPVEILDN SI EPDLMEIGAPESSWM+PI DFI+GNSPQDPKERRKLARRAARFV+RDGALYRRGFSLPLL+CLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

A0A6J1CQD7 Ribonuclease H3.6e-4397.87Show/hide
Query:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        +LASAYETDLARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  QLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

A0A6J1D6M1 Ribonuclease H4.4e-4141.43Show/hide
Query:  MVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ---------------------------------
        +VRGEQ  SRECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEELELVPLLSPE+Q                                 
Subjt:  MVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ---------------------------------

Query:  ----------------------------------------------------------------------------------------LASAYETDLARS
                                                                                                LASAYETDLARS
Subjt:  ----------------------------------------------------------------------------------------LASAYETDLARS

Query:  VPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG
        VPVEILDN SI EPDLME+  P  SWMD I +FI+GN PQDPKE +K+AR+ A+F++RDGALYR+GFSLPLL+C+TPE+G
Subjt:  VPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG

A0A6J1DYS0 Ribonuclease H9.0e-6366.82Show/hide
Query:  VRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-------------------------------------
        VRGEQTASRECYASALKGSSVCALE  A  + TLEF+ADLPR+EF+APTEELELVPLLS EKQ                                     
Subjt:  VRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-------------------------------------

Query:  ---------------------LASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGF
                             LASAYETDLARSVPVEILDN SISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLA R ARFVVRDGALYRRGF
Subjt:  ---------------------LASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGF

Query:  SLPLLRCLTPEEGL
        SLPLLRCLTPEEGL
Subjt:  SLPLLRCLTPEEGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCGAGGAGAACAGACCGCTTCGAGGGAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTT
CGAGGCCGACCTGCCGAGGAAGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAGTTAGCATCGGCGTACGAGACCGACCTGG
CCAGGTCGGTCCCCGTCGAGATCCTAGATAATGCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCAGACTTCATT
AGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGACGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCT
ATTGAGATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAGCCTACGACAAATGAGGAAAAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAGGAAGAGCAATGG
CCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATACCCGCGTTCGACCTCGGGCCTTTCAGGTCCGACATCTGGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCGAGGAGAACAGACCGCTTCGAGGGAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTT
CGAGGCCGACCTGCCGAGGAAGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAGTTAGCATCGGCGTACGAGACCGACCTGG
CCAGGTCGGTCCCCGTCGAGATCCTAGATAATGCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCAGACTTCATT
AGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGACGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCT
ATTGAGATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAGCCTACGACAAATGAGGAAAAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAGGAAGAGCAATGG
CCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATACCCGCGTTCGACCTCGGGCCTTTCAGGTCCGACATCTGGTCTTAA
Protein sequenceShow/hide protein sequence
MVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQLASAYETDLARSVPVEILDNASISEPDLMEIGAPESSWMDPIADFI
RGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGLVEHYEPTTNEEKLLLNLDLLEEGRAMASYAWRNIRAEWPDITIPAFDLGPFRSDIWS