; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g25890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g25890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:19538385..19542698
RNA-Seq ExpressionMoc06g25890
SyntenyMoc06g25890
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-1240Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  +  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1240.77Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  R  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]1.3e-1240.77Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  R  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]6.5e-1564.79Show/hide
Query:  SLVFFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMV
        SLV+FG   GNI KHSFI+WLA+   L TRD L R D  V  SCVFC G ES DNLFFEC FSWEVW  M+
Subjt:  SLVFFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMV

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.4e-1739.05Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRAK--------------------------------------------SLLGVECMGSV--VVGP-----SFCSLV
        D WLSGGPI  R  DR+IYD ASSS AK                                            ++ G+  + SV  ++ P     S+  L+
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRAK--------------------------------------------SLLGVECMGSV--VVGP-----SFCSLV

Query:  FFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMVT
        +FG   GNI KHSFISWLAI   L TR+ L + ++ VPA+CVFCAG+ESRD+LF +C +S  VW GM++
Subjt:  FFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMVT

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932256.5e-1340.77Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  R  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

A0A5A7UP65 Reverse transcriptase1.9e-1240Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  +  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

A0A5D3D7P6 Reverse transcriptase6.5e-1340.77Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS
        D WL  G I  R  +R++YDAAS   A   + +G +                  + P    +++ GL+   GNI KHSF +WLAI   L TRD   R DS
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRA--KSLLGVE------------CMGSVVVGPSFCSLVFFGLV--RGNILKHSFISWLAICGWLTTRDHLFRLDS

Query:  FVPASCVFC-AGMESRDNLFFECTFSWEVW
         VP SC+ C  GMESRD+LFF C F  +VW
Subjt:  FVPASCVFC-AGMESRDNLFFECTFSWEVW

A0A6J1DTG0 uncharacterized protein LOC1110241653.1e-1564.79Show/hide
Query:  SLVFFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMV
        SLV+FG   GNI KHSFI+WLA+   L TRD L R D  V  SCVFC G ES DNLFFEC FSWEVW  M+
Subjt:  SLVFFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMV

A0A6J1E271 uncharacterized protein LOC1110253246.7e-1839.05Show/hide
Query:  DAWLSGGPIDLRFSDRIIYDAASSSRAK--------------------------------------------SLLGVECMGSV--VVGP-----SFCSLV
        D WLSGGPI  R  DR+IYD ASSS AK                                            ++ G+  + SV  ++ P     S+  L+
Subjt:  DAWLSGGPIDLRFSDRIIYDAASSSRAK--------------------------------------------SLLGVECMGSV--VVGP-----SFCSLV

Query:  FFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMVT
        +FG   GNI KHSFISWLAI   L TR+ L + ++ VPA+CVFCAG+ESRD+LF +C +S  VW GM++
Subjt:  FFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.0e-0740Show/hide
Query:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEVW
        +G I KH+FI+W+ +   L T+D +       P  C+FC    E+R +LFF+C F+ EVW
Subjt:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.6e-0642.86Show/hide
Query:  KHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGM-ESRDNLFFECTFSWEVWF
        K+S ++W+AI   LTT D +   ++   +SCV C  + E+RD+LFF C +S EV F
Subjt:  KHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGM-ESRDNLFFECTFSWEVWF

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-0743.33Show/hide
Query:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEVW
        + ++ KH+FI W+     L TRD L      +PA C+ C A  +SR +LFFEC FS  VW
Subjt:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEVW

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-0745.76Show/hide
Query:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEV
        +G I KH+FISW+ I   L TRD L      VP+ C+ C A  E+R +LFF+C F+ E+
Subjt:  RGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFC-AGMESRDNLFFECTFSWEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAGATGTTTCCAGTCGTCGAGAAGTTTTTGAGCTCAAGGCTTATCGCTCGAGAAATAGGAAGAACACAAAGAATAAACCAAGATTGTCCCGTTGCTTGAACGG
GTGCGATTTTGACCCTGTAATATGCATCATTTCCAGAATTTTTGAGCTCAGGACTTGTGCATTATTTGAGCAGTGTGAGTTCATTTTAGATCAAGGTGTAGGTGCATTCT
TCTTCTCCCAGCTTGTGCATCACTCTCAATTGAAGGATGCTTTTCGGCCTCTGGTTCGGTTTGCTGATGCTTGGCTTTCGGGGGGTCCAATTGACTTGAGGTTTAGTGAT
CGGATTATCTATGATGCTGCAAGCTCGTCTCGGGCGAAGTCTCTTCTCGGCGTCGAGTGCATGGGGTCTGTTGTGGTCGGCCCGTCCTTCTGTTCCTTGGTTTTCTTTGG
TTTGGTTCGTGGGAACATTCTGAAGCATTCTTTCATTTCTTGGTTGGCGATATGTGGTTGGCTTACTACGAGGGATCACTTATTTCGTTTGGACTCTTTCGTTCCTGCTT
CCTGTGTGTTTTGTGCTGGCATGGAGTCCCGTGATAATCTATTCTTTGAGTGCACCTTTAGTTGGGAGGTTTGGTTTGGCATGGTTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAGATGTTTCCAGTCGTCGAGAAGTTTTTGAGCTCAAGGCTTATCGCTCGAGAAATAGGAAGAACACAAAGAATAAACCAAGATTGTCCCGTTGCTTGAACGG
GTGCGATTTTGACCCTGTAATATGCATCATTTCCAGAATTTTTGAGCTCAGGACTTGTGCATTATTTGAGCAGTGTGAGTTCATTTTAGATCAAGGTGTAGGTGCATTCT
TCTTCTCCCAGCTTGTGCATCACTCTCAATTGAAGGATGCTTTTCGGCCTCTGGTTCGGTTTGCTGATGCTTGGCTTTCGGGGGGTCCAATTGACTTGAGGTTTAGTGAT
CGGATTATCTATGATGCTGCAAGCTCGTCTCGGGCGAAGTCTCTTCTCGGCGTCGAGTGCATGGGGTCTGTTGTGGTCGGCCCGTCCTTCTGTTCCTTGGTTTTCTTTGG
TTTGGTTCGTGGGAACATTCTGAAGCATTCTTTCATTTCTTGGTTGGCGATATGTGGTTGGCTTACTACGAGGGATCACTTATTTCGTTTGGACTCTTTCGTTCCTGCTT
CCTGTGTGTTTTGTGCTGGCATGGAGTCCCGTGATAATCTATTCTTTGAGTGCACCTTTAGTTGGGAGGTTTGGTTTGGCATGGTTACTTAG
Protein sequenceShow/hide protein sequence
MKKDVSSRREVFELKAYRSRNRKNTKNKPRLSRCLNGCDFDPVICIISRIFELRTCALFEQCEFILDQGVGAFFFSQLVHHSQLKDAFRPLVRFADAWLSGGPIDLRFSD
RIIYDAASSSRAKSLLGVECMGSVVVGPSFCSLVFFGLVRGNILKHSFISWLAICGWLTTRDHLFRLDSFVPASCVFCAGMESRDNLFFECTFSWEVWFGMVT