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Moc06g26700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g26700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr6:20141630..20150465
RNA-Seq ExpressionMoc06g26700
SyntenyMoc06g26700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN79660.1 hypothetical protein VITISV_004324 [Vitis vinifera]4.7e-0449.23Show/hide
Query:  LQQVQESEHIPVTEIDEKIINDESDITIFANDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLSS
        +Q   ES H P    D+ I   E+      ND S+LDLPI LRK K  CTQ+PLS+FVS++ LSS
Subjt:  LQQVQESEHIPVTEIDEKIINDESDITIFANDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLSS

RVW79575.1 hypothetical protein CK203_051695 [Vitis vinifera]4.7e-0437.31Show/hide
Query:  LQGEELLLEDKDLPIPNLTFPISNP--------------LPPSLDTSP-----GPSNPSTTTPL-------QQVQESEHIPVTEIDEKIINDESDITIFA
        LQGE   +ED++L  P+LT P+S                +PP     P          + +TPL       Q   ES H P    D+     E+      
Subjt:  LQGEELLLEDKDLPIPNLTFPISNP--------------LPPSLDTSP-----GPSNPSTTTPL-------QQVQESEHIPVTEIDEKIINDESDITIFA

Query:  NDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLS
        ND S+LDLPIALRK K  CTQ+PLS+FVS+D LS
Subjt:  NDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLS

TrEMBL top hitse value%identityAlignment
A0A438FKT6 Copia protein6.6e-0437.61Show/hide
Query:  TFPISNPLPPSLDTS---------------PGPSNPSTTTPLQQVQESEHIPVTEIDEKIINDESDITIF----ANDESDLDLPIALRKRKWTCTQYPLS
        T P+S+ LPP  DT+               P    P   TP +Q QE +  P         N +   TI+    +ND  DLD PIALRK   +CTQ+P+S
Subjt:  TFPISNPLPPSLDTS---------------PGPSNPSTTTPLQQVQESEHIPVTEIDEKIINDESDITIF----ANDESDLDLPIALRKRKWTCTQYPLS

Query:  HFVSYDKLS
        + VSY KLS
Subjt:  HFVSYDKLS

A0A438H504 Uncharacterized protein2.3e-0437.31Show/hide
Query:  LQGEELLLEDKDLPIPNLTFPISNP--------------LPPSLDTSP-----GPSNPSTTTPL-------QQVQESEHIPVTEIDEKIINDESDITIFA
        LQGE   +ED++L  P+LT P+S                +PP     P          + +TPL       Q   ES H P    D+     E+      
Subjt:  LQGEELLLEDKDLPIPNLTFPISNP--------------LPPSLDTSP-----GPSNPSTTTPL-------QQVQESEHIPVTEIDEKIINDESDITIFA

Query:  NDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLS
        ND S+LDLPIALRK K  CTQ+PLS+FVS+D LS
Subjt:  NDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLS

A5C483 Reverse transcriptase Ty1/copia-type domain-containing protein2.3e-0449.23Show/hide
Query:  LQQVQESEHIPVTEIDEKIINDESDITIFANDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLSS
        +Q   ES H P    D+ I   E+      ND S+LDLPI LRK K  CTQ+PLS+FVS++ LSS
Subjt:  LQQVQESEHIPVTEIDEKIINDESDITIFANDESDLDLPIALRKRKWTCTQYPLSHFVSYDKLSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAACCAGCGTGAAATTGCTACACCTATCGAAGAGCTGGAGCTTGTTCCCTTGCTTAACTTAGAGAAACAAATTCAACATATTGAAATTCAAGAACTTTTGTTCCT
TAACACATTTGGTGTTGCTTCTTTCAAATCTAGCTTTAGGTTTGATGTTAAACCGATTCATTGGATTAGTCTCGATCAAGCTAATTCTGGAGAGACCATGAAAGAGTTTC
ACAAGAAGAGCATTCGTCAGTTGACAATAAAGAATGTAACACCAAACTTGATCTCAAAATGTGCTAAGCTACAATACACTAGGCCCGTGGCGAGGATCAGGGCAATGGGA
AGATTATTGGACTTGCTAATGAAAAAGACAGACTTTATTATCTTAATGAACTTGTCGGTCAGACTAGTGTTCCAGTCTCCTTCACCTCACAAACTCATCATCCTTCAAGG
GGAGGAACTATTATTGGAAGATAAGGATTTGCCCATTCCCAACCTCACATTTCCTATATCAAATCCTTTACCACCATCCTTAGACACCTCACCAGGACCATCTAACCCTT
CTACTACTACACCATTACAGCAAGTCCAAGAGTCTGAACATATCCCTGTAACTGAAATTGACGAGAAAATAATCAATGATGAGTCAGACATTACAATATTTGCTAATGAT
GAGTCAGACCTGGATTTGCCGATTGCTTTAAGGAAGAGAAAATGGACTTGTACTCAGTATCCATTGTCTCACTTTGTATCATATGACAAACTCTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAACCAGCGTGAAATTGCTACACCTATCGAAGAGCTGGAGCTTGTTCCCTTGCTTAACTTAGAGAAACAAATTCAACATATTGAAATTCAAGAACTTTTGTTCCT
TAACACATTTGGTGTTGCTTCTTTCAAATCTAGCTTTAGGTTTGATGTTAAACCGATTCATTGGATTAGTCTCGATCAAGCTAATTCTGGAGAGACCATGAAAGAGTTTC
ACAAGAAGAGCATTCGTCAGTTGACAATAAAGAATGTAACACCAAACTTGATCTCAAAATGTGCTAAGCTACAATACACTAGGCCCGTGGCGAGGATCAGGGCAATGGGA
AGATTATTGGACTTGCTAATGAAAAAGACAGACTTTATTATCTTAATGAACTTGTCGGTCAGACTAGTGTTCCAGTCTCCTTCACCTCACAAACTCATCATCCTTCAAGG
GGAGGAACTATTATTGGAAGATAAGGATTTGCCCATTCCCAACCTCACATTTCCTATATCAAATCCTTTACCACCATCCTTAGACACCTCACCAGGACCATCTAACCCTT
CTACTACTACACCATTACAGCAAGTCCAAGAGTCTGAACATATCCCTGTAACTGAAATTGACGAGAAAATAATCAATGATGAGTCAGACATTACAATATTTGCTAATGAT
GAGTCAGACCTGGATTTGCCGATTGCTTTAAGGAAGAGAAAATGGACTTGTACTCAGTATCCATTGTCTCACTTTGTATCATATGACAAACTCTCAAGTTAG
Protein sequenceShow/hide protein sequence
MINQREIATPIEELELVPLLNLEKQIQHIEIQELLFLNTFGVASFKSSFRFDVKPIHWISLDQANSGETMKEFHKKSIRQLTIKNVTPNLISKCAKLQYTRPVARIRAMG
RLLDLLMKKTDFIILMNLSVRLVFQSPSPHKLIILQGEELLLEDKDLPIPNLTFPISNPLPPSLDTSPGPSNPSTTTPLQQVQESEHIPVTEIDEKIINDESDITIFAND
ESDLDLPIALRKRKWTCTQYPLSHFVSYDKLSS