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Moc06g27320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g27320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr6:20583682..20584744
RNA-Seq ExpressionMoc06g27320
SyntenyMoc06g27320
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032769.1 uncharacterized protein E6C27_scaffold708G00140 [Cucumis melo var. makuwa]1.6e-0742.35Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR
        MS +   GK+  DRLV+IEE +L+L  +PD++RY+ES  DEIS +A  ID +  H++GL          A  +N N+R T+ Y+R
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR

TYK11972.1 uncharacterized protein E5676_scaffold177G001560 [Cucumis melo var. makuwa]7.9e-0742.35Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR
        MS     GK+  DRLV+IEE +L+L  +PD++RY+ES  DEIS +A  ID +   ++GL          A  KN N+R T+ Y+R
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]4.9e-0962.71Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL
        MS TKQL KSHVDRLV+IEE LL+LR +PD LR +E+  DE S +   ID +NA IDGL
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]1.7e-0944.68Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL------AAAKNNNSRLTLPYKRHNAGISGTPITRL
        MS TKQL KSHVDRLV+IEE LL+LR +PD+LR +E+  DE S +   ID +NA +DGL         +   S+ T P        S  P T++
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL------AAAKNNNSRLTLPYKRHNAGISGTPITRL

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.0e-1478.33Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGLA
        MS TKQLGKSH+DRLV+IEE LLFLR IPDNLRYVES  DEIS +A  IDV+NA IDGLA
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGLA

TrEMBL top hitse value%identityAlignment
A0A5A7SUD4 Retrotrans_gag domain-containing protein7.7e-0842.35Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR
        MS +   GK+  DRLV+IEE +L+L  +PD++RY+ES  DEIS +A  ID +  H++GL          A  +N N+R T+ Y+R
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR

A0A5D3CKX7 Retrotrans_gag domain-containing protein3.8e-0742.35Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR
        MS     GK+  DRLV+IEE +L+L  +PD++RY+ES  DEIS +A  ID +   ++GL          A  KN N+R T+ Y+R
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL----------AAAKNNNSRLTLPYKR

A0A6J1D906 Reverse transcriptase2.4e-0962.71Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL
        MS TKQL KSHVDRLV+IEE LL+LR +PD LR +E+  DE S +   ID +NA IDGL
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL

A0A6J1DK29 uncharacterized protein LOC1110218298.2e-1044.68Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL------AAAKNNNSRLTLPYKRHNAGISGTPITRL
        MS TKQL KSHVDRLV+IEE LL+LR +PD+LR +E+  DE S +   ID +NA +DGL         +   S+ T P        S  P T++
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGL------AAAKNNNSRLTLPYKRHNAGISGTPITRL

A0A6J1DLQ6 uncharacterized protein LOC1110223205.0e-1578.33Show/hide
Query:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGLA
        MS TKQLGKSH+DRLV+IEE LLFLR IPDNLRYVES  DEIS +A  IDV+NA IDGLA
Subjt:  MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATGACAAAGCAGTTGGGCAAGTCCCATGTTGACAGACTCGTCAAGATCGAAGAATGGCTGCTGTTCTTGAGGGGAATCCCTGACAATTTAAGATATGTGGAATC
TTGGCAGGATGAGATCTCCATTAGAGCTTATAGAATTGACGTCATGAATGCCCATATAGATGGGCTTGCTGCAGCAAAGAATAATAACAGTAGATTAACCTTACCATACA
AGCGGCATAACGCCGGGATTTCCGGGACTCCAATCACACGACTCACTAGCCCCTGCCTACTGGAGCTCGCACTCGCTCTACACCCCTATGTTGGTACTCCAGGTCTAACT
CTTCGAGGCGTATCGGCGCTTGACATTTATCCCCAAGATACCGATCTTCCTCTCCCACGCTTGGTGCTCGACCTTGCCATTTATTCCCAAGGCCTTGAATTATTACCCAT
AAGCATCACTTTACGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCATGACAAAGCAGTTGGGCAAGTCCCATGTTGACAGACTCGTCAAGATCGAAGAATGGCTGCTGTTCTTGAGGGGAATCCCTGACAATTTAAGATATGTGGAATC
TTGGCAGGATGAGATCTCCATTAGAGCTTATAGAATTGACGTCATGAATGCCCATATAGATGGGCTTGCTGCAGCAAAGAATAATAACAGTAGATTAACCTTACCATACA
AGCGGCATAACGCCGGGATTTCCGGGACTCCAATCACACGACTCACTAGCCCCTGCCTACTGGAGCTCGCACTCGCTCTACACCCCTATGTTGGTACTCCAGGTCTAACT
CTTCGAGGCGTATCGGCGCTTGACATTTATCCCCAAGATACCGATCTTCCTCTCCCACGCTTGGTGCTCGACCTTGCCATTTATTCCCAAGGCCTTGAATTATTACCCAT
AAGCATCACTTTACGTTAG
Protein sequenceShow/hide protein sequence
MSMTKQLGKSHVDRLVKIEEWLLFLRGIPDNLRYVESWQDEISIRAYRIDVMNAHIDGLAAAKNNNSRLTLPYKRHNAGISGTPITRLTSPCLLELALALHPYVGTPGLT
LRGVSALDIYPQDTDLPLPRLVLDLAIYSQGLELLPISITLR