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Moc06g27370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g27370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon gag protein
Genome locationchr6:20605637..20606450
RNA-Seq ExpressionMoc06g27370
SyntenyMoc06g27370
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150863.1 uncharacterized protein LOC111018910 [Momordica charantia]9.6e-1432.24Show/hide
Query:  MNPPYPPWCLPIPPNLRIKEIVDGVPVAADPEALVLPLNAALLADDTDR-------------------------------GSGH----------------
        MNPP P    PIPPN+RI+EIVDGVPVA + E +V  LN  LLA   DR                                 G+                
Subjt:  MNPPYPPWCLPIPPNLRIKEIVDGVPVAADPEALVLPLNAALLADDTDR-------------------------------GSGH----------------

Query:  ------------------------------------------------------------MLLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGAL
                                                                     L+QKC HH IPRCI I+ YYNGLDDATRLV   S N AL
Subjt:  ------------------------------------------------------------MLLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGAL

Query:  LAKPYVEAFNTLRK
        LAKPY EAFN L +
Subjt:  LAKPYVEAFNTLRK

XP_022156835.1 uncharacterized protein LOC111023669 [Momordica charantia]2.7e-1681.13Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        LLQKC HHGIPRCIQI+ YY GLDDATRLVIDAS NGALL KPY EAFN L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

XP_022159060.1 uncharacterized protein LOC111025500 [Momordica charantia]7.8e-1683.02Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        L+QK  + GIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPY EAFN L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

XP_030495032.1 uncharacterized protein LOC115710819 [Cannabis sativa]5.3e-1252.11Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRKYHQMITNGLTLEPLMGKE
        LL+KC HHGIP CIQ++T+YNGL+  TR+V+DASANGALLAK Y EA++ + +         T    +GK+
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRKYHQMITNGLTLEPLMGKE

XP_030509259.1 uncharacterized protein LOC115723937 [Cannabis sativa]6.9e-1264.15Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        LL+KC HHGIP CIQ++T+YNGL+ A+R+V+DASANGA+L+K Y EAF  L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like5.7e-1264.15Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        LLQKC HHGIP CIQ++T+YNGL   TR+V+DASANGALL+K Y EA+  + +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

A0A6J1DAK9 uncharacterized protein LOC1110189104.6e-1432.24Show/hide
Query:  MNPPYPPWCLPIPPNLRIKEIVDGVPVAADPEALVLPLNAALLADDTDR-------------------------------GSGH----------------
        MNPP P    PIPPN+RI+EIVDGVPVA + E +V  LN  LLA   DR                                 G+                
Subjt:  MNPPYPPWCLPIPPNLRIKEIVDGVPVAADPEALVLPLNAALLADDTDR-------------------------------GSGH----------------

Query:  ------------------------------------------------------------MLLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGAL
                                                                     L+QKC HH IPRCI I+ YYNGLDDATRLV   S N AL
Subjt:  ------------------------------------------------------------MLLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGAL

Query:  LAKPYVEAFNTLRK
        LAKPY EAFN L +
Subjt:  LAKPYVEAFNTLRK

A0A6J1DRG1 uncharacterized protein LOC1110236691.3e-1681.13Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        LLQKC HHGIPRCIQI+ YY GLDDATRLVIDAS NGALL KPY EAFN L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

A0A6J1DWK1 uncharacterized protein LOC1110250535.7e-1267.92Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        L Q+C +HGIP  IQI+TYY GLD+ATRLVIDAS NGALL KPY +A N L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

A0A6J1DXK5 uncharacterized protein LOC1110255003.8e-1683.02Show/hide
Query:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK
        L+QK  + GIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPY EAFN L +
Subjt:  LLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTLRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCGCCTTACCCACCTTGGTGCCTACCTATTCCACCAAATTTGAGGATTAAGGAAATAGTAGATGGGGTTCCTGTTGCTGCTGACCCTGAGGCATTAGTG
CTCCCTCTCAATGCTGCTTTATTAGCAGACGACACAGACAGAGGATCAGGGCATATGCTTTTGCAAAAATGCTCCCACCACGGAATCCCTCGATGCATCCAGATC
AAGACTTACTACAATGGGTTGGATGATGCCACACGCCTAGTCATCGATGCATCGGCAAATGGCGCATTGCTAGCAAAACCTTATGTTGAAGCTTTTAACACCCTG
AGAAAATATCATCAAATGATCACCAATGGTCTTACCCTAGAGCCATTAATGGGAAAGGAGGCAAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCGCCTTACCCACCTTGGTGCCTACCTATTCCACCAAATTTGAGGATTAAGGAAATAGTAGATGGGGTTCCTGTTGCTGCTGACCCTGAGGCATTAGTG
CTCCCTCTCAATGCTGCTTTATTAGCAGACGACACAGACAGAGGATCAGGGCATATGCTTTTGCAAAAATGCTCCCACCACGGAATCCCTCGATGCATCCAGATC
AAGACTTACTACAATGGGTTGGATGATGCCACACGCCTAGTCATCGATGCATCGGCAAATGGCGCATTGCTAGCAAAACCTTATGTTGAAGCTTTTAACACCCTG
AGAAAATATCATCAAATGATCACCAATGGTCTTACCCTAGAGCCATTAATGGGAAAGGAGGCAAGGGATTGA
Protein sequenceShow/hide protein sequence
MNPPYPPWCLPIPPNLRIKEIVDGVPVAADPEALVLPLNAALLADDTDRGSGHMLLQKCSHHGIPRCIQIKTYYNGLDDATRLVIDASANGALLAKPYVEAFNTL
RKYHQMITNGLTLEPLMGKEARD