; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g28040 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28040
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr6:21058005..21059188
RNA-Seq ExpressionMoc06g28040
SyntenyMoc06g28040
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX92970.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]5.6e-0525.76Show/hide
Query:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD
        D+ G+F V+SAY L L L +    S+S DE  R+ W   W++ V  KVKIH          W  A   +   E + +    A +I + +    +   +L 
Subjt:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD

Query:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED
         + +   ID +   D    Q   G+++R   G         +    +  E     C EG           I +E+DS+E+V L Q   N  +E++ ++ +
Subjt:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED

Query:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH
        I     G R   I+ + R  NT +H +A+
Subjt:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.1e-0827.91Show/hide
Query:  EEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRIDS-TRDHDGDPLQATTGSLIRMRHGMRRTEE------------------------ARSVGSVG
        EEER R M +AWQIWE RN+++F G   +  D+   ID    +  G        S  +  H +RR E+                          + G +G
Subjt:  EEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRIDS-TRDHDGDPLQATTGSLIRMRHGMRRTEE------------------------ARSVGSVG

Query:  -----TKEEKFRNNC-------------------------DEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTT
              K E  + +C                          E    IHLESDS+E++ LL R+  D TEI W+LE+I        +  ++++ R AN   
Subjt:  -----TKEEKFRNNC-------------------------DEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTT

Query:  HKIAHFAMEERLEME
        H +A  AME  L  E
Subjt:  HKIAHFAMEERLEME

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.1e-0827.8Show/hide
Query:  EEERARIMTVAWQIWEARNRALFWG---DKLDI----------------------------------------------------VDMMNRIDSTRDHDG
        EEER R M +AWQIWE RN+++F G   +  DI                                                     D   R D+     G
Subjt:  EEERARIMTVAWQIWEARNRALFWG---DKLDI----------------------------------------------------VDMMNRIDSTRDHDG

Query:  DPLQATTGSLIRMRHGMRRTEE--------ARSVGSVGTKEEKFRNNCDEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYV
          L+   G +I+    + RTE         A   G    ++E  R    E    IHLESDS+E++ LL R+  D TEI W+LE+I       ++  ++++
Subjt:  DPLQATTGSLIRMRHGMRRTEE--------ARSVGSVGTKEEKFRNNCDEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYV

Query:  RRNANTTTHKIAHFAMEERLEME
         R AN   H +A  AME  L  E
Subjt:  RRNANTTTHKIAHFAMEERLEME

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]3.3e-0521.49Show/hide
Query:  QICGIYDKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGW-----TTKDYW---------------------------
        Q+   YDK+G + VKS YQ+ ++++  +D S S   + +  W+  W+  +  KVKI   R       T ++ W                           
Subjt:  QICGIYDKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGW-----TTKDYW---------------------------

Query:  DRAFQI----------------------------KNEEERARIMTVAWQIWEARNRALFWGDKLD----------IVDMMNRI-----------DSTRDH
        +RA +I                              + E A +  + W IW+ARN+ LF G K +          IV+   +I           ++ R  
Subjt:  DRAFQI----------------------------KNEEERARIMTVAWQIWEARNRALFWGDKLD----------IVDMMNRI-----------DSTRDH

Query:  DGDP------------------LQATTGSLIRMRHGMRRTEEARSV---GSVGTKEEKFRNNCDEGTNAIHL-----ESDSMESVQLLQRRMNDFTEISW
           P                    A  G ++R   G  R    +S+   GSV   E        +     H+     ESDS+E + L+ ++ +  TEI W
Subjt:  DGDP------------------LQATTGSLIRMRHGMRRTEEARSV---GSVGTKEEKFRNNCDEGTNAIHL-----ESDSMESVQLLQRRMNDFTEISW

Query:  ILEDIR-NCDGGQRLQVIQYVRRNANTTTHKIAHFAMEERLEMEWTVELPLWLLSPLVLFLHM
        ++ DI+ N    Q  +  Q+  R+ N   H +A  A++++  + W  E+P     P +++L +
Subjt:  ILEDIR-NCDGGQRLQVIQYVRRNANTTTHKIAHFAMEERLEMEWTVELPLWLLSPLVLFLHM

XP_024043202.1 uncharacterized protein LOC112099905 [Citrus clementina]7.3e-0523.53Show/hide
Query:  YDKRGVFPVKSAYQLGLKLE--DAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGW-----TTKDYWDR----------------------------
        YDKRG + VKS YQ+ LKL+  ++  CS S        W   W+  +  K+KI   R       T ++ W R                            
Subjt:  YDKRGVFPVKSAYQLGLKLE--DAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGW-----TTKDYWDR----------------------------

Query:  -----------AFQ-----------IKNEEERARI-----MTVAWQIWEARNRALFWGDKLD----------IVDMMNRIDSTRDHDGDPLQ--ATTGSL
                   +FQ           ++ +++ +R+     MT+ W IW  RN+ +F   KLD          I +   R       +G  LQ     G++
Subjt:  -----------AFQ-----------IKNEEERARI-----MTVAWQIWEARNRALFWGDKLD----------IVDMMNRIDSTRDHDGDPLQ--ATTGSL

Query:  IR------MRHGMRRTEEARSVGSVGTKEEKFRNNCDE--GTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTTHK
        IR      M  G++  + +  V  V  +  ++     +  G  +I LE+DS E   L+  R  + TEI W + +I++          +YV R  N + H 
Subjt:  IR------MRHGMRRTEEARSVGSVGTKEEKFRNNCDE--GTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTTHK

Query:  IAHFAM
        +A  A+
Subjt:  IAHFAM

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.4e-0827.91Show/hide
Query:  EEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRIDS-TRDHDGDPLQATTGSLIRMRHGMRRTEE------------------------ARSVGSVG
        EEER R M +AWQIWE RN+++F G   +  D+   ID    +  G        S  +  H +RR E+                          + G +G
Subjt:  EEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRIDS-TRDHDGDPLQATTGSLIRMRHGMRRTEE------------------------ARSVGSVG

Query:  -----TKEEKFRNNC-------------------------DEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTT
              K E  + +C                          E    IHLESDS+E++ LL R+  D TEI W+LE+I        +  ++++ R AN   
Subjt:  -----TKEEKFRNNC-------------------------DEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANTTT

Query:  HKIAHFAMEERLEME
        H +A  AME  L  E
Subjt:  HKIAHFAMEERLEME

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.8e-0441.67Show/hide
Query:  KIHYRRGWTTKDYWDRAFQIKNEEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRID
        ++ +R  WTTK+YW+       EEER R M +A QIWE RN+++F G   +  D+   ID
Subjt:  KIHYRRGWTTKDYWDRAFQIKNEEERARIMTVAWQIWEARNRALFWGDKLDIVDMMNRID

A0A6J1DSV1 uncharacterized protein LOC1110236083.4e-0827.8Show/hide
Query:  EEERARIMTVAWQIWEARNRALFWG---DKLDI----------------------------------------------------VDMMNRIDSTRDHDG
        EEER R M +AWQIWE RN+++F G   +  DI                                                     D   R D+     G
Subjt:  EEERARIMTVAWQIWEARNRALFWG---DKLDI----------------------------------------------------VDMMNRIDSTRDHDG

Query:  DPLQATTGSLIRMRHGMRRTEE--------ARSVGSVGTKEEKFRNNCDEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYV
          L+   G +I+    + RTE         A   G    ++E  R    E    IHLESDS+E++ LL R+  D TEI W+LE+I       ++  ++++
Subjt:  DPLQATTGSLIRMRHGMRRTEE--------ARSVGSVGTKEEKFRNNCDEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYV

Query:  RRNANTTTHKIAHFAMEERLEME
         R AN   H +A  AME  L  E
Subjt:  RRNANTTTHKIAHFAMEERLEME

Q2R6V8 Retrotransposon protein, putative, unclassified2.7e-0525.76Show/hide
Query:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD
        D+ G+F V+SAY L L L +    S+S DE  R+ W   W++ V  KVKIH          W  A   +   E + +    A +I + +    +   +L 
Subjt:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD

Query:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED
         + +   ID +   D    Q   G+++R   G         +    +  E     C EG           I +E+DS+E+V L Q   N  +E++ ++ +
Subjt:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED

Query:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH
        I     G R   I+ + R  NT +H +A+
Subjt:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH

Q53MP1 Retrotransposon protein, putative, unclassified2.7e-0525.76Show/hide
Query:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD
        D+ G+F V+SAY L L L +    S+S DE  R+ W   W++ V  KVKIH          W  A   +   E + +    A +I + +    +   +L 
Subjt:  DKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQ-IKNEEERARIMTVAWQIWEARNRALFWGDKLD

Query:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED
         + +   ID +   D    Q   G+++R   G         +    +  E     C EG           I +E+DS+E+V L Q   N  +E++ ++ +
Subjt:  IVDMMNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEG--------TNAIHLESDSMESVQLLQRRMNDFTEISWILED

Query:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH
        I     G R   I+ + R  NT +H +A+
Subjt:  IRNCDGGQRLQVIQYVRRNANTTTHKIAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATTTGTGGCATTTATGATAAACGAGGGGTTTTCCCAGTTAAAAGTGCCTATCAGCTAGGTCTCAAGTTGGAAGATGCTAAGGATTGCTCAACCTCATTGGATGA
GTATCAAAGGCAGTGGTGGAAGAGCTTCTGGAGAACACCAGTGATGCCTAAAGTCAAAATTCATTATAGGAGAGGCTGGACTACCAAAGACTACTGGGACCGAGCTTTTC
AGATAAAAAATGAGGAGGAGAGAGCTCGAATAATGACAGTAGCATGGCAGATTTGGGAAGCACGAAACAGAGCACTTTTCTGGGGAGACAAGCTAGATATTGTTGATATG
ATGAACAGAATTGACTCCACTAGAGATCATGATGGAGACCCCCTTCAGGCAACTACTGGAAGCTTAATACGGATGCGGCATGGCATGCGGAGAACGGAAGAGGCCAGATC
AGTTGGATCTGTAGGGACGAAAGAGGAAAAGTTTAGAAACAATTGCGACGAGGGTACAAATGCGATTCATCTGGAATCAGATTCCATGGAGTCTGTACAACTTCTTCAAC
GGAGAATGAATGATTTCACGGAGATCTCATGGATTCTTGAAGATATTAGGAACTGTGACGGTGGACAGCGATTGCAAGTGATACAATACGTAAGGAGGAATGCTAACACT
ACGACACACAAGATTGCGCATTTTGCGATGGAAGAAAGGTTGGAGATGGAGTGGACTGTTGAACTTCCTTTATGGTTATTGAGTCCTTTAGTTTTGTTTCTTCATATGCT
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATTTGTGGCATTTATGATAAACGAGGGGTTTTCCCAGTTAAAAGTGCCTATCAGCTAGGTCTCAAGTTGGAAGATGCTAAGGATTGCTCAACCTCATTGGATGA
GTATCAAAGGCAGTGGTGGAAGAGCTTCTGGAGAACACCAGTGATGCCTAAAGTCAAAATTCATTATAGGAGAGGCTGGACTACCAAAGACTACTGGGACCGAGCTTTTC
AGATAAAAAATGAGGAGGAGAGAGCTCGAATAATGACAGTAGCATGGCAGATTTGGGAAGCACGAAACAGAGCACTTTTCTGGGGAGACAAGCTAGATATTGTTGATATG
ATGAACAGAATTGACTCCACTAGAGATCATGATGGAGACCCCCTTCAGGCAACTACTGGAAGCTTAATACGGATGCGGCATGGCATGCGGAGAACGGAAGAGGCCAGATC
AGTTGGATCTGTAGGGACGAAAGAGGAAAAGTTTAGAAACAATTGCGACGAGGGTACAAATGCGATTCATCTGGAATCAGATTCCATGGAGTCTGTACAACTTCTTCAAC
GGAGAATGAATGATTTCACGGAGATCTCATGGATTCTTGAAGATATTAGGAACTGTGACGGTGGACAGCGATTGCAAGTGATACAATACGTAAGGAGGAATGCTAACACT
ACGACACACAAGATTGCGCATTTTGCGATGGAAGAAAGGTTGGAGATGGAGTGGACTGTTGAACTTCCTTTATGGTTATTGAGTCCTTTAGTTTTGTTTCTTCATATGCT
GTAA
Protein sequenceShow/hide protein sequence
MQICGIYDKRGVFPVKSAYQLGLKLEDAKDCSTSLDEYQRQWWKSFWRTPVMPKVKIHYRRGWTTKDYWDRAFQIKNEEERARIMTVAWQIWEARNRALFWGDKLDIVDM
MNRIDSTRDHDGDPLQATTGSLIRMRHGMRRTEEARSVGSVGTKEEKFRNNCDEGTNAIHLESDSMESVQLLQRRMNDFTEISWILEDIRNCDGGQRLQVIQYVRRNANT
TTHKIAHFAMEERLEMEWTVELPLWLLSPLVLFLHML