; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g28080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr6:21070595..21070951
RNA-Seq ExpressionMoc06g28080
SyntenyMoc06g28080
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0786429.1 hypothetical protein [Gossypium trilobum]3.4e-0539.53Show/hide
Query:  GAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLR
        G I+RD+ G++     +    +LSV  A+A+ +  +L  A E+GF  +I+E DSRSV   I S+KEDLS++  +  + K LS+L R
Subjt:  GAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLR

XP_010689379.1 PREDICTED: uncharacterized protein LOC104903088 [Beta vulgaris subsp. vulgaris]2.6e-0531.58Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVA
        +G ++RD  G+V     +  RG + V+EA+AM  R    TAI++G   +I+E+D   + + + +  ED +  G I  +I+ L++L R+  F  V+
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVA

XP_030923859.1 uncharacterized protein LOC115950759 [Quercus lobata]4.4e-0533.67Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVAAVA
        +G +IR+  G+V          +L   EA+ +  R  L  AIE+GF+ LI+E D+ +    I S ++D S+LG++ D+I+ L+R LR  +F  +   A
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVAAVA

XP_030927600.1 uncharacterized protein LOC115953911 [Quercus lobata]2.0e-0534.74Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVA
        +G IIR+ +G+V +  L     +L   EA+++  R  L  AI+  F+ LI+E D+ +V + I S + DL++LG I D+I  L+  LR  +F  ++
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVA

XP_030930636.1 uncharacterized protein LOC115956377 [Quercus lobata]5.7e-0536.73Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVAAVA
        +GA+IR++KGEV          ++  A A+ +  R  L  A E GFT L++E D+ SV   + ++K D S LG I+ +IK L+R  R   F+ V   A
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVAAVA

TrEMBL top hitse value%identityAlignment
A0A2P5AJL1 Ribonuclease H-like domain containing protein2.3e-0436.25Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIK
        +G ++RD +GEV L F  S     SV  ++AM IR  L TA + G   L+IE+D+ SV  LI +    L+++ +++ +I+
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIK

A0A5B7A5C8 Uncharacterized protein8.9e-0438.75Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIK
        +G +IRD KGEV   F +     +S   A+AM I   +  A ++G  +L++E D   V S I    +DLS LG I+D+IK
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIK

A0A6J1CDQ4 uncharacterized protein LOC1110105332.3e-0432.73Show/hide
Query:  IIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKT--LSRLLRDAKFTIVAAVAIRW
        IIRD +G+V  +  +    + SV +A+A+   + L  A+E G + +++ETDS  +++L   +KE LS+ G I++ +KT   +RL     FT      I  
Subjt:  IIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKT--LSRLLRDAKFTIVAAVAIRW

Query:  RMQRRSLSSR
         + RR+L S+
Subjt:  RMQRRSLSSR

A0A7J9FMA3 RNase H domain-containing protein1.6e-0539.53Show/hide
Query:  GAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLR
        G I+RD+ G++     +    +LSV  A+A+ +  +L  A E+GF  +I+E DSRSV   I S+KEDLS++  +  + K LS+L R
Subjt:  GAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLR

A0A7N2RFA1 Uncharacterized protein1.6e-0539.02Show/hide
Query:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTL
        +GAIIR+++GEV        + +L   EA+ +  R  L  AI++GF++L+IE DS  V + + S   +LS+LG I D+I+ L
Subjt:  MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCGATAATCAGAGACAAAAAAGGTGAAGTTTACCTTACCTTTCTTCAGAGTAGGCGAGGCTTATTATCTGTTGCGGAGGCTCAGGCGATGGTGATCAGAGACAA
TTTGTGGACGGCGATTGAGATGGGATTCACCCAGCTGATTATTGAAACTGATTCTCGAAGTGTTTTCTCACTGATTCATTCAAATAAAGAAGATCTTTCTCAGTTAGGGT
TAATTATGGATGAAATCAAAACTCTTTCGCGGTTGTTAAGAGATGCGAAATTTACCATTGTCGCCGCAGTTGCAATCAGGTGGCGCATGCAGCGGCGAAGCTTGTCGTCG
AGGAGAACATCGATGGCGTCTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCGATAATCAGAGACAAAAAAGGTGAAGTTTACCTTACCTTTCTTCAGAGTAGGCGAGGCTTATTATCTGTTGCGGAGGCTCAGGCGATGGTGATCAGAGACAA
TTTGTGGACGGCGATTGAGATGGGATTCACCCAGCTGATTATTGAAACTGATTCTCGAAGTGTTTTCTCACTGATTCATTCAAATAAAGAAGATCTTTCTCAGTTAGGGT
TAATTATGGATGAAATCAAAACTCTTTCGCGGTTGTTAAGAGATGCGAAATTTACCATTGTCGCCGCAGTTGCAATCAGGTGGCGCATGCAGCGGCGAAGCTTGTCGTCG
AGGAGAACATCGATGGCGTCTAGTTAG
Protein sequenceShow/hide protein sequence
MGAIIRDKKGEVYLTFLQSRRGLLSVAEAQAMVIRDNLWTAIEMGFTQLIIETDSRSVFSLIHSNKEDLSQLGLIMDEIKTLSRLLRDAKFTIVAAVAIRWRMQRRSLSS
RRTSMASS