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Moc06g28090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:21073316..21074046
RNA-Seq ExpressionMoc06g28090
SyntenyMoc06g28090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7115099.1 hypothetical protein RHSIM_RhsimUnG0064500 [Rhododendron simsii]6.5e-1433.58Show/hide
Query:  VNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWK
        V   G+ L  ++ S A  HV+  + +F S I  + G VR  NE +SK+ G+ ++ L T++  +L+L  VR++P  R+NLI  GKLDD+G + +F   +WK
Subjt:  VNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWK

Query:  LMRGYEVVVVGHREASAYVLRFDIARGSEKHVMHKAA
        L +G  VV  G + ++ Y+++  +++G    +  +A+
Subjt:  LMRGYEVVVVGHREASAYVLRFDIARGSEKHVMHKAA

KAG8371917.1 hypothetical protein BUALT_Bualt12G0012700 [Buddleja alternifolia]6.5e-1433.07Show/hide
Query:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV
        ++ S A  H++P +  FTS ++ N G VR  N  +++V G+  + L TD+   L+L  VR+IP  R+N+I  GKLDD G    F + +WKL +G  +   
Subjt:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV

Query:  GHREASAYVLRFDIARGSEKHVMHKAA
        G ++ S Y+++  ++ G     ++ A+
Subjt:  GHREASAYVLRFDIARGSEKHVMHKAA

KYP31853.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]5.0e-1438.46Show/hide
Query:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV
        ++ S A  HV+P + +F+S    + GMV+  N   SK+ GI E+ L T++  +L+L  VR++P  R+NLI + KLD+ G   +F+ +RWKL RG  +V  
Subjt:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV

Query:  GHREASAYVLRFDIARG
        G +E S Y ++  I +G
Subjt:  GHREASAYVLRFDIARG

RVW84557.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.0e-1435.16Show/hide
Query:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW
        ++N +G+ +  ++ S A  HV+    +FTS    + G VR  NE +SK+  + ++ L T++  +L+L  VR++P  R+NLI  GKLDD+G    F+  +W
Subjt:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW

Query:  KLMRGYEVVVVGHREASAYVLRFDIARG
        KL +G  VV  G +  S Y+++  I +G
Subjt:  KLMRGYEVVVVGHREASAYVLRFDIARG

RVW91307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.9e-1435.94Show/hide
Query:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW
        ++N +G+    ++ S A  HV+    +FTS    + G VR  NE +SK+ G+ ++ L T++  +L+L  VR++P  R+NLI  GKLDD+G    F+  +W
Subjt:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW

Query:  KLMRGYEVVVVGHREASAYVLRFDIARG
        KL +G  VV  G++  S Y ++  I +G
Subjt:  KLMRGYEVVVVGHREASAYVLRFDIARG

TrEMBL top hitse value%identityAlignment
A0A151QNH6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1438.46Show/hide
Query:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV
        ++ S A  HV+P + +F+S    + GMV+  N   SK+ GI E+ L T++  +L+L  VR++P  R+NLI + KLD+ G   +F+ +RWKL RG  +V  
Subjt:  LLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVV

Query:  GHREASAYVLRFDIARG
        G +E S Y ++  I +G
Subjt:  GHREASAYVLRFDIARG

A0A438FR91 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-1440.74Show/hide
Query:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR
        S A +H +P K +FTS  + + G VR  N+  +K  G+ +LRL T +   L L  V++IP  RMNLI  GKLDD+G    F  ++WKL RG  V+  G++
Subjt:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR

Query:  EASAYVLR
         +S Y+++
Subjt:  EASAYVLR

A0A438GP95 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-1439.81Show/hide
Query:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR
        S A +H +P K +FTS  + + G VR  N+  +K  G+ ++RL T +   L L  V++IP  RMNLI  GKLDD+G    F  ++WKL RG  V+  G++
Subjt:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR

Query:  EASAYVLR
         +S Y+++
Subjt:  EASAYVLR

A0A438HJE1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1435.16Show/hide
Query:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW
        ++N +G+ +  ++ S A  HV+    +FTS    + G VR  NE +SK+  + ++ L T++  +L+L  VR++P  R+NLI  GKLDD+G    F+  +W
Subjt:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW

Query:  KLMRGYEVVVVGHREASAYVLRFDIARG
        KL +G  VV  G +  S Y+++  I +G
Subjt:  KLMRGYEVVVVGHREASAYVLRFDIARG

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1435.94Show/hide
Query:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW
        ++N +G+    ++ S A  HV+    +FTS    + G VR  NE +SK+ G+ ++ L T++  +L+L  VR++P  R+NLI  GKLDD+G    F+  +W
Subjt:  AVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRW

Query:  KLMRGYEVVVVGHREASAYVLRFDIARG
        KL +G  VV  G++  S Y ++  I +G
Subjt:  KLMRGYEVVVVGHREASAYVLRFDIARG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1031.58Show/hide
Query:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR
        +AA  H +P +  F   +  + G V+  N   SK+ GI ++ ++T+    LVL  VR++P  RMNLI    LD  G    F   +W+L +G  V+  G  
Subjt:  SAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKLMRGYEVVVVGHR

Query:  EASAYVLRFDIARG
          + Y    +I +G
Subjt:  EASAYVLRFDIARG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCAATTGCTGAGTAGATTTGCAGTAAATGAAGTGGGAAGAATTCTGTATCCACTTCTGTGCAGTGCAGCTTTGGTACATGTATCTCCAGACAAAAGTTGGTTCAC
ATCCCTCATTACCTACAATCATGGCATGGTGAGGACAAGGAATGAGAGACTTTCCAAGGTCAGAGGAATTGAGGAGTTGCGTTTGAGGACTGATAGTAGGATCGAGTTAG
TTTTGCATGGTGTCAGGTATATACCCAGTTTTAGGATGAATTTGATATTAATGGGGAAGTTGGATGATAAAGGCGATAGAGGTGAGTTTACAAAAAACAGGTGGAAACTC
ATGAGGGGATATGAGGTAGTGGTTGTTGGCCATAGAGAAGCTTCAGCGTATGTGTTGAGGTTTGACATTGCTAGAGGATCGGAGAAACATGTTATGCACAAGGCTGCAGA
TAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCAATTGCTGAGTAGATTTGCAGTAAATGAAGTGGGAAGAATTCTGTATCCACTTCTGTGCAGTGCAGCTTTGGTACATGTATCTCCAGACAAAAGTTGGTTCAC
ATCCCTCATTACCTACAATCATGGCATGGTGAGGACAAGGAATGAGAGACTTTCCAAGGTCAGAGGAATTGAGGAGTTGCGTTTGAGGACTGATAGTAGGATCGAGTTAG
TTTTGCATGGTGTCAGGTATATACCCAGTTTTAGGATGAATTTGATATTAATGGGGAAGTTGGATGATAAAGGCGATAGAGGTGAGTTTACAAAAAACAGGTGGAAACTC
ATGAGGGGATATGAGGTAGTGGTTGTTGGCCATAGAGAAGCTTCAGCGTATGTGTTGAGGTTTGACATTGCTAGAGGATCGGAGAAACATGTTATGCACAAGGCTGCAGA
TAGTTAA
Protein sequenceShow/hide protein sequence
MLQLLSRFAVNEVGRILYPLLCSAALVHVSPDKSWFTSLITYNHGMVRTRNERLSKVRGIEELRLRTDSRIELVLHGVRYIPSFRMNLILMGKLDDKGDRGEFTKNRWKL
MRGYEVVVVGHREASAYVLRFDIARGSEKHVMHKAADS