; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g28200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:21164506..21186696
RNA-Seq ExpressionMoc06g28200
SyntenyMoc06g28200
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]6.6e-3770.9Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKEEFQARE RM KYLSQVRNQLDQF      +       +   LARLA  YET+LGRTV VEIL  PSIEAQEAMDI +QGQPEENWKS 
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQ+RAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
XP_022155342.1 uncharacterized protein LOC111022476 [Momordica charantia]6.9e-2685Show/hide
Query:  ARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSPLIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        ARLAAAYET+L RTV VEILPEPSIEA EAMDI EQGQPE+NWKS LIKY RDGIL TEKI+AQQLQRRA RY+LKDDNL
Subjt:  ARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSPLIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.1e-3974.63Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKEEFQAREPRMAKYLSQVRNQLDQF      +           LARLAA YET+LGRTV VEILPEPSIEAQEAMDI  QGQ EEN KSP
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQRRAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]7.6e-4174.63Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKE+FQARE RMAKYLSQVRNQLDQF      +  H    +  +LARLA AYET+LGRTV VEILP PSIEAQEAMDI  QGQPEENWKSP
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQRRAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]9.3e-3163.43Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKFHVLK-TSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD      QVKEEFQAREPRMAKYLS+V++QL QF      +    +  +   LARLAAAY T+LGRT+SVEIL EPSI+AQE MDI EQ Q EENW S 
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKFHVLK-TSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL  E I+ QQLQR+AARYVLKD++L
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H3.2e-3770.9Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKEEFQARE RM KYLSQVRNQLDQF      +       +   LARLA  YET+LGRTV VEIL  PSIEAQEAMDI +QGQPEENWKS 
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQ+RAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
A0A6J1DP30 uncharacterized protein LOC1110224763.3e-2685Show/hide
Query:  ARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSPLIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        ARLAAAYET+L RTV VEILPEPSIEA EAMDI EQGQPE+NWKS LIKY RDGIL TEKI+AQQLQRRA RY+LKDDNL
Subjt:  ARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSPLIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
A0A6J1DVC6 Ribonuclease H5.3e-4074.63Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKEEFQAREPRMAKYLSQVRNQLDQF      +           LARLAA YET+LGRTV VEILPEPSIEAQEAMDI  QGQ EEN KSP
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQRRAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
A0A6J1DZU0 Ribonuclease H3.7e-4174.63Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD     GQVKE+FQARE RMAKYLSQVRNQLDQF      +  H    +  +LARLA AYET+LGRTV VEILP PSIEAQEAMDI  QGQPEENWKSP
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKF-HVLKTSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL TEKI+AQQLQRRAARYVLKDDNL
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
A0A6J1E1Q5 uncharacterized protein LOC1110256234.5e-3163.43Show/hide
Query:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKFHVLK-TSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP
        SD      QVKEEFQAREPRMAKYLS+V++QL QF      +    +  +   LARLAAAY T+LGRT+SVEIL EPSI+AQE MDI EQ Q EENW S 
Subjt:  SDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKFHVLK-TSTLMLARLAAAYETNLGRTVSVEILPEPSIEAQEAMDIYEQGQPEENWKSP

Query:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
        LIKY +DGIL  E I+ QQLQR+AARYVLKD++L
Subjt:  LIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGCAGATCTGCGCGGCAGATCTCCCTCTTGCCCTGCTCGGACTTGGTCCTCGACTATTCTTGGGTCGCGGTCTCGCTGAGTGCCATTATCAGCGATGTCGTCCC
CACAGACGGCGCCAAATGTTTATGCAAGGGTTTGCAAAACGGTTCTTCACGAATCGAGCTCGAACCCGGTCTCCGGTTCCGACCTGAGCCATATGGTGGACCTGAACAAG
AAGGCAAATACTCCAACGTTCAAGTCAGTATAGATCGGATTCCGTATTCAGTTCGAGGGATGTACGTCAACGATCAGGTCGATTTTCAGGCTGAAATCAACACCGACTGG
CATATGTGTGATGTGGGAAGAGGGTCTGGTGAGTGCAAAAGAGGGAAGGGGTTCTGCGGTCTTCGAACTGCAAAGAGAGGCTATCTTAAAGCTAGCACCGATACGTTTGG
CGCATCGCCAACACTCCAGAAACTTCAGCAATGCGTCTGGCGCATTCTCCACCTACAAATAAGGGCTTTTGTTGACCGGGCAGTTGGAAGAAATCTCAACCCATCCCTTG
ATCCGTGCAACCAAATGCTGTTAAAGCCCCATTATAGCTCCTCCACTCAAATACCCAAGATTTTCTCCACCAACTTGCAAGGTATCAGTTCCCTTATCATCGAGTTTGGT
GTATGCAAGAAGAAGAGCCGGAGGGTCAAAATCCACGCATCAACAATTGGCACCATCTTTGGGGACGATACAGTAAAGCAAGCTTCGTCGAAGCGAAATTCCGATCCGAG
GCATGTAGAGTGCAGCGACCGACCATTCGGGCGAGGTCAGGTGAAAGAGGAGTTCCAGGCTAGAGAACCACGAATGGCGAAATACCTTTCACAGGTAAGAAACCAGCTCG
ACCAGTTTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACGCTGATGCTAGCTCGACTAGCTGCAGCTTATGAAACCAACCTAGGCAGAACTGTATCG
GTCGAGATTCTACCTGAGCCAAGCATAGAAGCTCAGGAAGCAATGGATATCTACGAGCAAGGGCAACCAGAAGAAAACTGGAAAAGCCCTTTAATCAAATATTCGAGAGA
CGGGATCCTGCATACTGAAAAGATAAAGGCCCAGCAGCTACAACGACGAGCAGCCAGATATGTGCTTAAAGACGACAATTTAGTGGGGGCTATTGTTATAGAGAACAAAA
ATGACCCGAAATGGGACAAGGAGTTGAAGCCTGAGATCATCGATTGGGGGAGACCGGCCCGCGACGTAACAGGCCGACCCAAAGAACGACCTAACACCGAGGCAGAGAAC
GAGGAAAATGAAATTCAACGTGTTCGAGACATGTGCAATGACTTAGTGAAGTATTACAAATCCACTTCAAGTATGGTTGGAGAATCTTCAAGTTCTATAGTTACTTCTTT
GACCCCAAGGCGAGATGTGAATAATTGTATTGTTCAAAAGAAAGACAGATTTCTCAAGTACGATGAGTATGTTAGTATTGTTGCAGATACTGACAATATTGGCCATGGGC
AGGAGATACAAGATGAAAATGAAGTGGCAACTATTTTGGAGGACCAGGATCTAGATGATGAGCTGAGTGCTGCAAAGTCTGCTATTAATGATGCTAGAGCCTGGTGTCTG
CCAGATGCTCTAGCACATGTGACTGCGGCCACAGAGAGTCCTAGAGCAACAAATCAAGAACCTGCACTCGAGGTCGCCGACCTTCACGGAATACTGAACCCGAGCTATGG
AGGAGTTATGTCGCCAAAACCAAATGCCCCGAATGCCCCAACTGCAATAGAACCATCGTCCGGTACCAAGACAGATGTCGCGCCTGCTGTTGTTCGCAGGAGGTGGCGCG
CCACTGCTGGTGGCCTCGGAGTACCTTTGTTTTGTCTAGCCCAAGTTTCTAAGATGATTTACTCTTGGGATGACGGAAAGAGATCAAAGCTTTCTCTTCTGACGATGGTT
GGAGTTGACGTCAGTCAAAGAGGTCACCGGTCATCAGAGTCTGCGTCAGGGAGAGGTGGTGCGGCTGGGTATCAACAAGGAAGGAGAACACAGAGAGGGGCTGGTGGCTC
ACAAAAAATGCTCCAGCATTTTATTTGTCACCCTAATCTTACTTCTGTTGCTTTGGCCTTCTACAATGTCGTTGTCCATTTGTTCGGGGCAGATCGATGGGGTCTGATCC
TGATGAAGGAACAAAATCTGGTTGATTTCGACCTTGTGCCTCATCGGCAAGCTTCAGGACCTGAGTCGAGTTGGGCTTCAGATGTTAATGTGACTGATGTGATTAATGGC
GATCCTCCATCTCATCAATATCACACGCGATCTTCGGTGCCCTCAATCGCCCCTAGCCATTCGGCTTATCTTCATGAGGAGTCCACCTTTTCTTCCTCTCGTGGCAACAC
CGATTCTTCTTCCCAGGTTTTAGCTTTTCCTTTCCATAGGTCATACTTTGCTGATATCGATGAGGTGGCCTACTTGGAGAGGGCCTTTGGCCTTTTGCAGATTGCCGATA
AGATCAGACATTTTTGCCAGAACTATGCCCCAGGGGATGAGCTTAATCGAGCCTCTCATAATGAACTGATAGACCTGCGAGGCTCGATGAAGCTAAAGCCCAGTTTTCCA
ATTCCAAATTTATGGTGGAGGAGTTTAAGAAAAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGCAGATCTGCGCGGCAGATCTCCCTCTTGCCCTGCTCGGACTTGGTCCTCGACTATTCTTGGGTCGCGGTCTCGCTGAGTGCCATTATCAGCGATGTCGTCCC
CACAGACGGCGCCAAATGTTTATGCAAGGGTTTGCAAAACGGTTCTTCACGAATCGAGCTCGAACCCGGTCTCCGGTTCCGACCTGAGCCATATGGTGGACCTGAACAAG
AAGGCAAATACTCCAACGTTCAAGTCAGTATAGATCGGATTCCGTATTCAGTTCGAGGGATGTACGTCAACGATCAGGTCGATTTTCAGGCTGAAATCAACACCGACTGG
CATATGTGTGATGTGGGAAGAGGGTCTGGTGAGTGCAAAAGAGGGAAGGGGTTCTGCGGTCTTCGAACTGCAAAGAGAGGCTATCTTAAAGCTAGCACCGATACGTTTGG
CGCATCGCCAACACTCCAGAAACTTCAGCAATGCGTCTGGCGCATTCTCCACCTACAAATAAGGGCTTTTGTTGACCGGGCAGTTGGAAGAAATCTCAACCCATCCCTTG
ATCCGTGCAACCAAATGCTGTTAAAGCCCCATTATAGCTCCTCCACTCAAATACCCAAGATTTTCTCCACCAACTTGCAAGGTATCAGTTCCCTTATCATCGAGTTTGGT
GTATGCAAGAAGAAGAGCCGGAGGGTCAAAATCCACGCATCAACAATTGGCACCATCTTTGGGGACGATACAGTAAAGCAAGCTTCGTCGAAGCGAAATTCCGATCCGAG
GCATGTAGAGTGCAGCGACCGACCATTCGGGCGAGGTCAGGTGAAAGAGGAGTTCCAGGCTAGAGAACCACGAATGGCGAAATACCTTTCACAGGTAAGAAACCAGCTCG
ACCAGTTTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACGCTGATGCTAGCTCGACTAGCTGCAGCTTATGAAACCAACCTAGGCAGAACTGTATCG
GTCGAGATTCTACCTGAGCCAAGCATAGAAGCTCAGGAAGCAATGGATATCTACGAGCAAGGGCAACCAGAAGAAAACTGGAAAAGCCCTTTAATCAAATATTCGAGAGA
CGGGATCCTGCATACTGAAAAGATAAAGGCCCAGCAGCTACAACGACGAGCAGCCAGATATGTGCTTAAAGACGACAATTTAGTGGGGGCTATTGTTATAGAGAACAAAA
ATGACCCGAAATGGGACAAGGAGTTGAAGCCTGAGATCATCGATTGGGGGAGACCGGCCCGCGACGTAACAGGCCGACCCAAAGAACGACCTAACACCGAGGCAGAGAAC
GAGGAAAATGAAATTCAACGTGTTCGAGACATGTGCAATGACTTAGTGAAGTATTACAAATCCACTTCAAGTATGGTTGGAGAATCTTCAAGTTCTATAGTTACTTCTTT
GACCCCAAGGCGAGATGTGAATAATTGTATTGTTCAAAAGAAAGACAGATTTCTCAAGTACGATGAGTATGTTAGTATTGTTGCAGATACTGACAATATTGGCCATGGGC
AGGAGATACAAGATGAAAATGAAGTGGCAACTATTTTGGAGGACCAGGATCTAGATGATGAGCTGAGTGCTGCAAAGTCTGCTATTAATGATGCTAGAGCCTGGTGTCTG
CCAGATGCTCTAGCACATGTGACTGCGGCCACAGAGAGTCCTAGAGCAACAAATCAAGAACCTGCACTCGAGGTCGCCGACCTTCACGGAATACTGAACCCGAGCTATGG
AGGAGTTATGTCGCCAAAACCAAATGCCCCGAATGCCCCAACTGCAATAGAACCATCGTCCGGTACCAAGACAGATGTCGCGCCTGCTGTTGTTCGCAGGAGGTGGCGCG
CCACTGCTGGTGGCCTCGGAGTACCTTTGTTTTGTCTAGCCCAAGTTTCTAAGATGATTTACTCTTGGGATGACGGAAAGAGATCAAAGCTTTCTCTTCTGACGATGGTT
GGAGTTGACGTCAGTCAAAGAGGTCACCGGTCATCAGAGTCTGCGTCAGGGAGAGGTGGTGCGGCTGGGTATCAACAAGGAAGGAGAACACAGAGAGGGGCTGGTGGCTC
ACAAAAAATGCTCCAGCATTTTATTTGTCACCCTAATCTTACTTCTGTTGCTTTGGCCTTCTACAATGTCGTTGTCCATTTGTTCGGGGCAGATCGATGGGGTCTGATCC
TGATGAAGGAACAAAATCTGGTTGATTTCGACCTTGTGCCTCATCGGCAAGCTTCAGGACCTGAGTCGAGTTGGGCTTCAGATGTTAATGTGACTGATGTGATTAATGGC
GATCCTCCATCTCATCAATATCACACGCGATCTTCGGTGCCCTCAATCGCCCCTAGCCATTCGGCTTATCTTCATGAGGAGTCCACCTTTTCTTCCTCTCGTGGCAACAC
CGATTCTTCTTCCCAGGTTTTAGCTTTTCCTTTCCATAGGTCATACTTTGCTGATATCGATGAGGTGGCCTACTTGGAGAGGGCCTTTGGCCTTTTGCAGATTGCCGATA
AGATCAGACATTTTTGCCAGAACTATGCCCCAGGGGATGAGCTTAATCGAGCCTCTCATAATGAACTGATAGACCTGCGAGGCTCGATGAAGCTAAAGCCCAGTTTTCCA
ATTCCAAATTTATGGTGGAGGAGTTTAAGAAAAGTGTAG
Protein sequenceShow/hide protein sequence
MAGRSARQISLLPCSDLVLDYSWVAVSLSAIISDVVPTDGAKCLCKGLQNGSSRIELEPGLRFRPEPYGGPEQEGKYSNVQVSIDRIPYSVRGMYVNDQVDFQAEINTDW
HMCDVGRGSGECKRGKGFCGLRTAKRGYLKASTDTFGASPTLQKLQQCVWRILHLQIRAFVDRAVGRNLNPSLDPCNQMLLKPHYSSSTQIPKIFSTNLQGISSLIIEFG
VCKKKSRRVKIHASTIGTIFGDDTVKQASSKRNSDPRHVECSDRPFGRGQVKEEFQAREPRMAKYLSQVRNQLDQFQNMRFDKFHVLKTSTLMLARLAAAYETNLGRTVS
VEILPEPSIEAQEAMDIYEQGQPEENWKSPLIKYSRDGILHTEKIKAQQLQRRAARYVLKDDNLVGAIVIENKNDPKWDKELKPEIIDWGRPARDVTGRPKERPNTEAEN
EENEIQRVRDMCNDLVKYYKSTSSMVGESSSSIVTSLTPRRDVNNCIVQKKDRFLKYDEYVSIVADTDNIGHGQEIQDENEVATILEDQDLDDELSAAKSAINDARAWCL
PDALAHVTAATESPRATNQEPALEVADLHGILNPSYGGVMSPKPNAPNAPTAIEPSSGTKTDVAPAVVRRRWRATAGGLGVPLFCLAQVSKMIYSWDDGKRSKLSLLTMV
GVDVSQRGHRSSESASGRGGAAGYQQGRRTQRGAGGSQKMLQHFICHPNLTSVALAFYNVVVHLFGADRWGLILMKEQNLVDFDLVPHRQASGPESSWASDVNVTDVING
DPPSHQYHTRSSVPSIAPSHSAYLHEESTFSSSRGNTDSSSQVLAFPFHRSYFADIDEVAYLERAFGLLQIADKIRHFCQNYAPGDELNRASHNELIDLRGSMKLKPSFP
IPNLWWRSLRKV