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Moc06g28210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:21186835..21187660
RNA-Seq ExpressionMoc06g28210
SyntenyMoc06g28210
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]4.3e-7162.55Show/hide
Query:  MRHRLRTMEEMYAEVTRA--NRTASPSRVP-GAPGEKGAQFIQPGDR-EPIPNDGVDYSLRDNDLRKHLTEKKKKASRE---------------------
        MR ++ TME+MY+E+ +A   R+ S +RV      E+    + P  +  P   +  +Y+ +  DLR+HL  K+  + R+                     
Subjt:  MRHRLRTMEEMYAEVTRA--NRTASPSRVP-GAPGEKGAQFIQPGDR-EPIPNDGVDYSLRDNDLRKHLTEKKKKASRE---------------------

Query:  --PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQ
          PE     EEFD +K +FD QVEALKA+CEKKESSFDDGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKCR FQ
Subjt:  --PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQ

Query:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        IALTGSARLWYRRLPA+SISTYSQLRKEFI QFSSRHYDRKTATHL TIRQKEGETLRE
Subjt:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]1.3e-9180.09Show/hide
Query:  VPGAPGEKGAQFIQPGDREPIPND-GVDYSLRDNDLRKHLTEKKKKASREPEDF----------------------------PEEFDLMKHRFDEQVEAL
        +PGAPGEKGA  IQPG+REPIPND GVDYSLRDNDLRKHLT+KKKKAS EPED                              EEFDLMKHRFDEQVEAL
Subjt:  VPGAPGEKGAQFIQPGDREPIPND-GVDYSLRDNDLRKHLTEKKKKASREPEDF----------------------------PEEFDLMKHRFDEQVEAL

Query:  KARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLR
        KARCEKKES FDD DLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKC AFQIALTGSARLW RRLPA+SISTYSQLR
Subjt:  KARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLR

Query:  KEFISQFSSRHYDRKTATHLATIRQKEGETL
        KEFI QFS RHYDRKTATHLATIRQKE ETL
Subjt:  KEFISQFSSRHYDRKTATHLATIRQKEGETL

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]9.6e-7161.87Show/hide
Query:  MRHRLRTMEEMYAEVTRANRTASPSRVPGAPGEKGAQFIQPGDRE--PIPNDGVDYSLRDNDLRKHLTEKKKKASR-----------------------E
        MR ++RTMEEMY ++          ++ GA    G Q +     E   +  D VD      DLR HL  K+  + R                        
Subjt:  MRHRLRTMEEMYAEVTRANRTASPSRVPGAPGEKGAQFIQPGDRE--PIPNDGVDYSLRDNDLRKHLTEKKKKASR-----------------------E

Query:  PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIA
        PE     EEF+ +K +FD QVEALK RCEKKES+FDDGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDYVEVFEGL+DFQAATDAIKCRAFQIA
Subjt:  PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIA

Query:  LTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        LTGSARLWYRRLPA+SISTYSQLRKEFISQF SRHYDRKT THLATIRQKEG+TL+E
Subjt:  LTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

XP_022157897.1 uncharacterized protein LOC111024503 [Momordica charantia]4.3e-7180.66Show/hide
Query:  DGVDYSLRDNDLRKHLTEKKKKASREPEDFPEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYV
        D   YS   ++       K K  + E     EEFDLMKHRFDEQVEALKA+CEKKE SFDDGDLGESPFTSDI+E PIPPKFKTPTMK YD SKDPKDYV
Subjt:  DGVDYSLRDNDLRKHLTEKKKKASREPEDFPEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYV

Query:  EVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        EVFEGL+DFQAATDAIKC AFQIALTGSARLWYRRLPA+SISTYSQLRKEFISQF SRHYDRKTATHLATIRQKEGETLRE
Subjt:  EVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]6.6e-7295.86Show/hide
Query:  MKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRL
        MKH+FDEQVEALKARCEKKE SFDDGDLGESPFTSDI+EAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKCRAFQIALT SARLWYRRL
Subjt:  MKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRL

Query:  PAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        PA+SISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
Subjt:  PAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196342.1e-7162.55Show/hide
Query:  MRHRLRTMEEMYAEVTRA--NRTASPSRVP-GAPGEKGAQFIQPGDR-EPIPNDGVDYSLRDNDLRKHLTEKKKKASRE---------------------
        MR ++ TME+MY+E+ +A   R+ S +RV      E+    + P  +  P   +  +Y+ +  DLR+HL  K+  + R+                     
Subjt:  MRHRLRTMEEMYAEVTRA--NRTASPSRVP-GAPGEKGAQFIQPGDR-EPIPNDGVDYSLRDNDLRKHLTEKKKKASRE---------------------

Query:  --PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQ
          PE     EEFD +K +FD QVEALKA+CEKKESSFDDGDLGESPFTSDI+EA IP KFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKCR FQ
Subjt:  --PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQ

Query:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        IALTGSARLWYRRLPA+SISTYSQLRKEFI QFSSRHYDRKTATHL TIRQKEGETLRE
Subjt:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

A0A6J1DPC9 uncharacterized protein LOC1110222806.2e-9280.09Show/hide
Query:  VPGAPGEKGAQFIQPGDREPIPND-GVDYSLRDNDLRKHLTEKKKKASREPEDF----------------------------PEEFDLMKHRFDEQVEAL
        +PGAPGEKGA  IQPG+REPIPND GVDYSLRDNDLRKHLT+KKKKAS EPED                              EEFDLMKHRFDEQVEAL
Subjt:  VPGAPGEKGAQFIQPGDREPIPND-GVDYSLRDNDLRKHLTEKKKKASREPEDF----------------------------PEEFDLMKHRFDEQVEAL

Query:  KARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLR
        KARCEKKES FDD DLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKC AFQIALTGSARLW RRLPA+SISTYSQLR
Subjt:  KARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLR

Query:  KEFISQFSSRHYDRKTATHLATIRQKEGETL
        KEFI QFS RHYDRKTATHLATIRQKE ETL
Subjt:  KEFISQFSSRHYDRKTATHLATIRQKEGETL

A0A6J1DPN4 uncharacterized protein LOC1110230604.6e-7161.87Show/hide
Query:  MRHRLRTMEEMYAEVTRANRTASPSRVPGAPGEKGAQFIQPGDRE--PIPNDGVDYSLRDNDLRKHLTEKKKKASR-----------------------E
        MR ++RTMEEMY ++          ++ GA    G Q +     E   +  D VD      DLR HL  K+  + R                        
Subjt:  MRHRLRTMEEMYAEVTRANRTASPSRVPGAPGEKGAQFIQPGDRE--PIPNDGVDYSLRDNDLRKHLTEKKKKASR-----------------------E

Query:  PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIA
        PE     EEF+ +K +FD QVEALK RCEKKES+FDDGDLGESPFTSDI+EA IPPKFKTPTMK YDGSKDPKDYVEVFEGL+DFQAATDAIKCRAFQIA
Subjt:  PEDF--PEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIA

Query:  LTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        LTGSARLWYRRLPA+SISTYSQLRKEFISQF SRHYDRKT THLATIRQKEG+TL+E
Subjt:  LTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

A0A6J1DVR0 uncharacterized protein LOC1110245032.1e-7180.66Show/hide
Query:  DGVDYSLRDNDLRKHLTEKKKKASREPEDFPEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYV
        D   YS   ++       K K  + E     EEFDLMKHRFDEQVEALKA+CEKKE SFDDGDLGESPFTSDI+E PIPPKFKTPTMK YD SKDPKDYV
Subjt:  DGVDYSLRDNDLRKHLTEKKKKASREPEDFPEEFDLMKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYV

Query:  EVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        EVFEGL+DFQAATDAIKC AFQIALTGSARLWYRRLPA+SISTYSQLRKEFISQF SRHYDRKTATHLATIRQKEGETLRE
Subjt:  EVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

A0A6J1DY58 uncharacterized protein LOC1110256633.2e-7295.86Show/hide
Query:  MKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRL
        MKH+FDEQVEALKARCEKKE SFDDGDLGESPFTSDI+EAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGL+DFQAATDAIKCRAFQIALT SARLWYRRL
Subjt:  MKHRFDEQVEALKARCEKKESSFDDGDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRL

Query:  PAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
        PA+SISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE
Subjt:  PAKSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCATCGGTTGCGCACAATGGAAGAAATGTACGCTGAGGTAACGCGTGCTAACCGAACCGCGTCTCCCTCTAGGGTCCCGGGAGCACCCGGTGAAAAGGGAGCTCA
GTTTATCCAACCTGGCGACCGCGAGCCCATCCCCAACGATGGAGTGGATTACAGCTTGCGGGATAACGATCTAAGAAAGCATCTGACTGAAAAGAAGAAGAAAGCCTCTC
GGGAGCCGGAGGACTTTCCGGAAGAGTTCGACCTGATGAAGCACAGGTTCGATGAGCAGGTCGAAGCACTCAAAGCTAGGTGCGAGAAGAAGGAGAGCTCGTTTGACGAT
GGCGACTTGGGAGAATCGCCATTCACCTCGGATATTATGGAGGCTCCAATCCCTCCAAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCTAAAGA
CTATGTTGAGGTCTTCGAAGGCCTCATAGACTTTCAAGCGGCAACAGATGCAATCAAGTGCCGCGCCTTCCAGATCGCGCTTACCGGCAGCGCGCGCCTGTGGTACCGGA
GACTGCCGGCTAAGTCGATATCGACCTATTCTCAGCTGAGAAAGGAGTTCATCAGCCAATTCTCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCACCATC
AGACAGAAGGAAGGTGAGACGCTGAGAGAATGTCACAAGGTTCCAGGAGGAGCAGCTGAAGGTCACGCACTGCTCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCATCGGTTGCGCACAATGGAAGAAATGTACGCTGAGGTAACGCGTGCTAACCGAACCGCGTCTCCCTCTAGGGTCCCGGGAGCACCCGGTGAAAAGGGAGCTCA
GTTTATCCAACCTGGCGACCGCGAGCCCATCCCCAACGATGGAGTGGATTACAGCTTGCGGGATAACGATCTAAGAAAGCATCTGACTGAAAAGAAGAAGAAAGCCTCTC
GGGAGCCGGAGGACTTTCCGGAAGAGTTCGACCTGATGAAGCACAGGTTCGATGAGCAGGTCGAAGCACTCAAAGCTAGGTGCGAGAAGAAGGAGAGCTCGTTTGACGAT
GGCGACTTGGGAGAATCGCCATTCACCTCGGATATTATGGAGGCTCCAATCCCTCCAAAGTTCAAGACTCCCACTATGAAGCCCTATGATGGGTCTAAGGACCCTAAAGA
CTATGTTGAGGTCTTCGAAGGCCTCATAGACTTTCAAGCGGCAACAGATGCAATCAAGTGCCGCGCCTTCCAGATCGCGCTTACCGGCAGCGCGCGCCTGTGGTACCGGA
GACTGCCGGCTAAGTCGATATCGACCTATTCTCAGCTGAGAAAGGAGTTCATCAGCCAATTCTCTTCTCGACATTACGATAGAAAAACAGCGACTCACCTCGCCACCATC
AGACAGAAGGAAGGTGAGACGCTGAGAGAATGTCACAAGGTTCCAGGAGGAGCAGCTGAAGGTCACGCACTGCTCCGATGA
Protein sequenceShow/hide protein sequence
MRHRLRTMEEMYAEVTRANRTASPSRVPGAPGEKGAQFIQPGDREPIPNDGVDYSLRDNDLRKHLTEKKKKASREPEDFPEEFDLMKHRFDEQVEALKARCEKKESSFDD
GDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDPKDYVEVFEGLIDFQAATDAIKCRAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATI
RQKEGETLRECHKVPGGAAEGHALLR