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Moc06g28320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr6:21239915..21240414
RNA-Seq ExpressionMoc06g28320
SyntenyMoc06g28320
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154847.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]2.6e-1576.27Show/hide
Query:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY
        MAGEGAANRAGE+PN IL  DN DVAMRNYVT AFHN+NSGI+N LP+A Q ELKP+M+
Subjt:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY

XP_022157400.1 uncharacterized protein LOC111024107 [Momordica charantia]3.2e-1334.42Show/hide
Query:  VPNPI--LDNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIM---------YG-------------------------------------------
        VPNPI   D  D AMR+Y      ++NS + NPLP   QFE KP+M         +G                                           
Subjt:  VPNPI--LDNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIM---------YG-------------------------------------------

Query:  ARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
        A  WLN     +I TW+++ DKFL KY   TRN D+RE+++SFRQKENE V  A
Subjt:  ARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

XP_022158314.1 uncharacterized protein LOC111024824 [Momordica charantia]1.5e-1550Show/hide
Query:  AGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVV
        AGEGAANRAGEVPNPIL  DN DVA+RNYVTHAFHN+NS + +  P        P  +  ++++ +     +   +E   +       L  N DLRED+V
Subjt:  AGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVV

Query:  SFRQKENEVVQE
        SFRQKENE VQE
Subjt:  SFRQKENEVVQE

XP_022158836.1 uncharacterized protein LOC111025302 [Momordica charantia]2.0e-3956.63Show/hide
Query:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY-----------------------------------------
        MAGE AANR GE+PN IL  DN DVAMRNYVTHAFHN+NSGI+NPLP+A QFELKP+M+                                         
Subjt:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY-----------------------------------------

Query:  -----------GARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
                   GARTW+N LEPNSI TWAELTDKFLAKYHTLT+N DLRED+VSFRQKENE VQEA
Subjt:  -----------GARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

XP_022159127.1 uncharacterized protein LOC111025557 [Momordica charantia]2.4e-1664.86Show/hide
Query:  GISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
        G+S    R   F    +  GA TW+NVLE N I TWAELTDKFLAKYHTLTRN DL+ED+VSFRQ+E+E VQEA
Subjt:  GISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

TrEMBL top hitse value%identityAlignment
A0A6J1DMT3 LOW QUALITY PROTEIN: uncharacterized protein LOC1110220071.3e-1576.27Show/hide
Query:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY
        MAGEGAANRAGE+PN IL  DN DVAMRNYVT AFHN+NSGI+N LP+A Q ELKP+M+
Subjt:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY

A0A6J1DSZ5 uncharacterized protein LOC1110241071.5e-1334.42Show/hide
Query:  VPNPI--LDNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIM---------YG-------------------------------------------
        VPNPI   D  D AMR+Y      ++NS + NPLP   QFE KP+M         +G                                           
Subjt:  VPNPI--LDNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIM---------YG-------------------------------------------

Query:  ARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
        A  WLN     +I TW+++ DKFL KY   TRN D+RE+++SFRQKENE V  A
Subjt:  ARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

A0A6J1DYY9 uncharacterized protein LOC1110255578.7e-1766.22Show/hide
Query:  GISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
        G+S    R   F    +  GA TWLNVLE N I TWAELTDKFLAKYHTLTRN DL+ED+VSFRQ+E+E VQEA
Subjt:  GISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

A0A6J1DZ19 uncharacterized protein LOC1110248247.4e-1650Show/hide
Query:  AGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVV
        AGEGAANRAGEVPNPIL  DN DVA+RNYVTHAFHN+NS + +  P        P  +  ++++ +     +   +E   +       L  N DLRED+V
Subjt:  AGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVV

Query:  SFRQKENEVVQE
        SFRQKENE VQE
Subjt:  SFRQKENEVVQE

A0A6J1E251 uncharacterized protein LOC1110253029.6e-4056.63Show/hide
Query:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY-----------------------------------------
        MAGE AANR GE+PN IL  DN DVAMRNYVTHAFHN+NSGI+NPLP+A QFELKP+M+                                         
Subjt:  MAGEGAANRAGEVPNPIL--DNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMY-----------------------------------------

Query:  -----------GARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA
                   GARTW+N LEPNSI TWAELTDKFLAKYHTLT+N DLRED+VSFRQKENE VQEA
Subjt:  -----------GARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGTGAAGGAGCAGCAAACCGAGCCGGAGAAGTGCCTAATCCGATCCTTGATAACAGTGATGTAGCCATGCGGAACTATGTCACTCATGCGTTCCACAACATAAA
TTCAGGGATAAGTAATCCTTTACCTCGAGCCACACAGTTCGAACTTAAGCCAATCATGTACGGTGCAAGGACTTGGCTAAACGTGCTAGAACCAAATTCTATCATGACAT
GGGCAGAACTGACGGATAAATTTTTGGCAAAGTACCACACTTTGACCAGGAACGTAGACCTTCGAGAAGACGTTGTGTCCTTTCGACAAAAGGAGAACGAAGTAGTTCAA
GAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGTGAAGGAGCAGCAAACCGAGCCGGAGAAGTGCCTAATCCGATCCTTGATAACAGTGATGTAGCCATGCGGAACTATGTCACTCATGCGTTCCACAACATAAA
TTCAGGGATAAGTAATCCTTTACCTCGAGCCACACAGTTCGAACTTAAGCCAATCATGTACGGTGCAAGGACTTGGCTAAACGTGCTAGAACCAAATTCTATCATGACAT
GGGCAGAACTGACGGATAAATTTTTGGCAAAGTACCACACTTTGACCAGGAACGTAGACCTTCGAGAAGACGTTGTGTCCTTTCGACAAAAGGAGAACGAAGTAGTTCAA
GAAGCTTAG
Protein sequenceShow/hide protein sequence
MAGEGAANRAGEVPNPILDNSDVAMRNYVTHAFHNINSGISNPLPRATQFELKPIMYGARTWLNVLEPNSIMTWAELTDKFLAKYHTLTRNVDLREDVVSFRQKENEVVQ
EA