CuGenDBv2

Gene ID	Moc06g28360
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr6:21256648..21257357
RNA-Seq Expression	Moc06g28360
Synteny	Moc06g28360
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.4e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

A0A5A7TWB9 Gag/pol protein

1.4e-73

65.8

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

A0A5A7V4M1 Gag/pol protein

1.4e-73

65.8

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

A0A5D3CPJ6 Gag/pol protein

1.4e-73

65.8

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Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

A0A5D3CSZ6 Gag/pol protein

1.4e-73

65.8

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQ +FILESLP+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK K                      
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCK----------------------

Query:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS
                     KKK  G+G K N AAA    K K A KG CFHCN + HWKRNCPKY+AEKKKA +GKYDLLVLETCLVENDDSAWI++SGATNHVCS
Subjt:  -------------KKKAAGKGFKPNSAAAAQKGKVKVAEKGKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCS

Query:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV
        SFQGISSWRQL+ GEMT++VGT  VVSA+ V
Subjt:  SFQGISSWRQLDPGEMTLKVGTEEVVSAVTV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGGAGGGTTCATCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGAGCCGTCATAGACGAGCAGAGTCAGGACAAC
TTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGTAGCAATGCAGTTATGAATAAGCTGGAGTATACTCTTACCACGCTCTTAAACGAGCTGCAGACC
TACCAGTCTCTTATGAAATGTAAGAAGAAGAAGGCTGCTGGTAAGGGGTTTAAACCTAACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAA
GGAAAGTGTTTCCACTGCAACATGGACGTGCATTGGAAGCGCAACTGCCCAAAGTACATGGCCGAAAAGAAGAAAGCCAATGAAGGTAAATATGATTTACTTGTA
TTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGAATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAG
CTTGACCCCGGAGAGATGACTCTCAAAGTCGGAACGGAAGAGGTCGTCTCAGCTGTGACGGTTTGGTGA

mRNA sequence

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Protein sequence

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MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQDNFILESLPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCKKKKAAGKGFKPNSAAAAQKGKVKVAEK
GKCFHCNMDVHWKRNCPKYMAEKKKANEGKYDLLVLETCLVENDDSAWILNSGATNHVCSSFQGISSWRQLDPGEMTLKVGTEEVVSAVTVW

Moc06g28360 (gene) of Bitter gourd (OHB3-1) v2 genome