; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g28690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g28690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr6:21614180..21626917
RNA-Seq ExpressionMoc06g28690
SyntenyMoc06g28690
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.5e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
A0A5A7TU93 Gag/pol protein3.5e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
A0A5A7TWB9 Gag/pol protein3.5e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
A0A5A7TZD7 Gag/pol protein3.5e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
A0A5A7V4M1 Gag/pol protein3.5e-4950.97Show/hide
Query:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------
        K N+  +  ILAS+S+VLAKKHES++ AREIMDSLQ+MFG                                                            
Subjt:  KVNDTTKVDILASISDVLAKKHESIVIAREIMDSLQDMFGY-----------------------------------------------------------

Query:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD
                N VMNKI Y LTTLLNELQ F+SLMK K Q+GEAN  TS ++FH+GSTSGTKS  SSSG+K +KKKK  G+G KA   A   TKK K   A 
Subjt:  --------NVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTS-KRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKAYPTATAATKKGKTKVAD

Query:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
        KG CF CN + HWKRNC KYLAEKKKAK+ KYDLLV ETCLVENDDS WI+DSGATNH+
Subjt:  KGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGGTGTGGATGACTCGTCCAATGTCCGAGATAACGTTCAATCCGGGATGGGGTTTAGGATTTTAGGACAAAGGAAACGTCCGAGATGGGGTTTAGGGTTTTA
CTTGGAGGGAGTTCCCTTCATTTTTAAACATGAGGGTACTATGTTTGTGAGGACAGAATATAAAGAGGATTGGAAGCGGCTCAAACTCGAAGAAGTGAGTGAGATGAGCT
TGGACTTGGTCTGGGCCTTGGCCATTAACGTGAAGATTTACGAACCCGATTCAAATATATGTAATGGACCGAATCAAACCACATTCATTAGGATCAAAGTCAATGACACG
ACGAAGGTCGACATCTTGGCAAGCATATCTGATGTGCTGGCCAAGAAGCATGAGAGCATAGTCATCGCAAGGGAGATCATGGACTCGTTGCAGGACATGTTTGGATACAA
TGTTGTGATGAACAAGATAGAGTATAACCTTACCACACTCTTAAATGAGCTACAGATTTTTCAGTCTCTTATGAAAAATAAGAGACAGGAAGGAGAGGCAAACGCTGTCA
CCTCAAAACGATTCCATCAAGGTTCGACCTCAGGAACCAAATCTGAACTTTCTTCTTCTGGAAGTAAGACTTTCAAAAAGAAGAAGAACAATGGTAAGGGGGTGAAAGCT
TACCCTACTGCTACTGCTGCTACCAAGAAGGGCAAGACCAAAGTTGCAGATAAAGGAAAATGTTTCCGTTGCAATGCGGATGAGCACTGGAAAAGAAACTGCTCGAAATA
CTTGGCCGAAAAGAAGAAAGCCAAAGAAGTTAAATATGATTTACTTGTTTTTGAAACTTGCTTAGTGGAGAATGATGATTCTACTTGGATACTGGATTCAGGGGCCACTA
ACCATATTGTGTTAAATGAGATTTCCGATGAAGCTACAAATGCATCAACAAGAGTTGTTGATAAAGCTAGCACTTCAACAAGAGTTGTTGATGGCGCTAGCACATCACGT
CAATCACATTCATATCAAGAGTGGAGAGTGCCTCGACTTAGTGGGAGGATTGTATCACAACCTGATCATTACGTGGGTTTACTAGAAACTCAGGTCGTCATACCTGGTCC
ATTAGGTCCTCTTGCTAATGGACTGCCGTGGTGGGAAATACTTGATGGCGGATCTTCCCGTATCCTAGGCCCTACCATCAGCCGAGTTCATTTGCTATTTATTCCTAGAG
AAGATACATCCCATCTGATCTTTACTTATAAGCATCAACCTGGAATGAGGCGTAATTCGAATCCTGATACATCTACGAACTATGGGCCAGCGTATCTTATTATGGGTCTA
TCGTCGGATCAAGAGTCGGGACGCGATGGGCTCGGGCCGGCATGCATCGTGGTCGAGTCGAGTCTTCTGGAGTTCTCAGCCAGGAGACCAAGAATTGCTCGGCGTCGAGA
AGGTCTCGGAGTCGAGCCTTGGTCAGTGCCGACCACTAGTCGACTGGGGAGGCCGACTTGGGTTGCCGAGCACCGACCCCCTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGATGGTGTGGATGACTCGTCCAATGTCCGAGATAACGTTCAATCCGGGATGGGGTTTAGGATTTTAGGACAAAGGAAACGTCCGAGATGGGGTTTAGGGTTTTA
CTTGGAGGGAGTTCCCTTCATTTTTAAACATGAGGGTACTATGTTTGTGAGGACAGAATATAAAGAGGATTGGAAGCGGCTCAAACTCGAAGAAGTGAGTGAGATGAGCT
TGGACTTGGTCTGGGCCTTGGCCATTAACGTGAAGATTTACGAACCCGATTCAAATATATGTAATGGACCGAATCAAACCACATTCATTAGGATCAAAGTCAATGACACG
ACGAAGGTCGACATCTTGGCAAGCATATCTGATGTGCTGGCCAAGAAGCATGAGAGCATAGTCATCGCAAGGGAGATCATGGACTCGTTGCAGGACATGTTTGGATACAA
TGTTGTGATGAACAAGATAGAGTATAACCTTACCACACTCTTAAATGAGCTACAGATTTTTCAGTCTCTTATGAAAAATAAGAGACAGGAAGGAGAGGCAAACGCTGTCA
CCTCAAAACGATTCCATCAAGGTTCGACCTCAGGAACCAAATCTGAACTTTCTTCTTCTGGAAGTAAGACTTTCAAAAAGAAGAAGAACAATGGTAAGGGGGTGAAAGCT
TACCCTACTGCTACTGCTGCTACCAAGAAGGGCAAGACCAAAGTTGCAGATAAAGGAAAATGTTTCCGTTGCAATGCGGATGAGCACTGGAAAAGAAACTGCTCGAAATA
CTTGGCCGAAAAGAAGAAAGCCAAAGAAGTTAAATATGATTTACTTGTTTTTGAAACTTGCTTAGTGGAGAATGATGATTCTACTTGGATACTGGATTCAGGGGCCACTA
ACCATATTGTGTTAAATGAGATTTCCGATGAAGCTACAAATGCATCAACAAGAGTTGTTGATAAAGCTAGCACTTCAACAAGAGTTGTTGATGGCGCTAGCACATCACGT
CAATCACATTCATATCAAGAGTGGAGAGTGCCTCGACTTAGTGGGAGGATTGTATCACAACCTGATCATTACGTGGGTTTACTAGAAACTCAGGTCGTCATACCTGGTCC
ATTAGGTCCTCTTGCTAATGGACTGCCGTGGTGGGAAATACTTGATGGCGGATCTTCCCGTATCCTAGGCCCTACCATCAGCCGAGTTCATTTGCTATTTATTCCTAGAG
AAGATACATCCCATCTGATCTTTACTTATAAGCATCAACCTGGAATGAGGCGTAATTCGAATCCTGATACATCTACGAACTATGGGCCAGCGTATCTTATTATGGGTCTA
TCGTCGGATCAAGAGTCGGGACGCGATGGGCTCGGGCCGGCATGCATCGTGGTCGAGTCGAGTCTTCTGGAGTTCTCAGCCAGGAGACCAAGAATTGCTCGGCGTCGAGA
AGGTCTCGGAGTCGAGCCTTGGTCAGTGCCGACCACTAGTCGACTGGGGAGGCCGACTTGGGTTGCCGAGCACCGACCCCCTTTCTAG
Protein sequenceShow/hide protein sequence
MDDGVDDSSNVRDNVQSGMGFRILGQRKRPRWGLGFYLEGVPFIFKHEGTMFVRTEYKEDWKRLKLEEVSEMSLDLVWALAINVKIYEPDSNICNGPNQTTFIRIKVNDT
TKVDILASISDVLAKKHESIVIAREIMDSLQDMFGYNVVMNKIEYNLTTLLNELQIFQSLMKNKRQEGEANAVTSKRFHQGSTSGTKSELSSSGSKTFKKKKNNGKGVKA
YPTATAATKKGKTKVADKGKCFRCNADEHWKRNCSKYLAEKKKAKEVKYDLLVFETCLVENDDSTWILDSGATNHIVLNEISDEATNASTRVVDKASTSTRVVDGASTSR
QSHSYQEWRVPRLSGRIVSQPDHYVGLLETQVVIPGPLGPLANGLPWWEILDGGSSRILGPTISRVHLLFIPREDTSHLIFTYKHQPGMRRNSNPDTSTNYGPAYLIMGL
SSDQESGRDGLGPACIVVESSLLEFSARRPRIARRREGLGVEPWSVPTTSRLGRPTWVAEHRPPF