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Moc06g29170 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g29170
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTranscription factor MYB34
Genome locationchr6:21946724..21947713
RNA-Seq ExpressionMoc06g29170
SyntenyMoc06g29170
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3473374.1 transcription factor MYB34 [Gossypium australe]1.8e-0835.44Show/hide
Query:  DMANQGANQVGEAPNL---ILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF-----
        D+ NQ  +Q   A N+   IL+AD+RD A++ YV   FN LN  I     +A+QFELK VMFQMLQTMGQ  G+ T+ P     L + +   FK      
Subjt:  DMANQGANQVGEAPNL---ILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF-----

Query:  ------LVFPFFSQGQYKNMAECTRTRFDHHLDGNNVLTTEKANKAPIPTVIPKPSPA
                 P   Q  + N +  T   F  +  GN +  T   ++      IPKP  A
Subjt:  ------LVFPFFSQGQYKNMAECTRTRFDHHLDGNNVLTTEKANKAPIPTVIPKPSPA

XP_022150327.1 uncharacterized protein LOC111018524 [Momordica charantia]5.1e-1145.92Show/hide
Query:  DPPVIEDMANQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF
        DPP++    N    Q     N IL+ADNRDVAM+ Y   AF NL+S I N +P+AA  ELK +MFQMLQT+GQ GG   + P       L++   F+F
Subjt:  DPPVIEDMANQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF

XP_022154847.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]4.5e-2372.22Show/hide
Query:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP
        QD P  Q+PPV  DMA +G AN+ GE PN ILLADNRDVAM+NYVT AF+NLNS I+NLLPQAAQ ELK VMF MLQTMGQ GGLT + P
Subjt:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP

XP_022158314.1 uncharacterized protein LOC111024824 [Momordica charantia]4.5e-0760.71Show/hide
Query:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRI
        QD P   +PPV  D A +G AN+ GE PN ILL DNRDVA++NYVT+AF+NLNS +
Subjt:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRI

XP_022158836.1 uncharacterized protein LOC111025302 [Momordica charantia]4.0e-2473.33Show/hide
Query:  QDAPLLQDPPVIEDMA-NQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP
        QD P  Q+PPV  DMA  + AN+VGE PNLILLADNRDVAM+NYVT+AF+NLNS I+N LPQAAQFELK VMFQ+LQTMGQ GGLT + P
Subjt:  QDAPLLQDPPVIEDMA-NQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP

TrEMBL top hitse value%identityAlignment
A0A5B6VWL2 Transcription factor MYB348.8e-0935.44Show/hide
Query:  DMANQGANQVGEAPNL---ILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF-----
        D+ NQ  +Q   A N+   IL+AD+RD A++ YV   FN LN  I     +A+QFELK VMFQMLQTMGQ  G+ T+ P     L + +   FK      
Subjt:  DMANQGANQVGEAPNL---ILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF-----

Query:  ------LVFPFFSQGQYKNMAECTRTRFDHHLDGNNVLTTEKANKAPIPTVIPKPSPA
                 P   Q  + N +  T   F  +  GN +  T   ++      IPKP  A
Subjt:  ------LVFPFFSQGQYKNMAECTRTRFDHHLDGNNVLTTEKANKAPIPTVIPKPSPA

A0A6J1DAG1 uncharacterized protein LOC1110185242.5e-1145.92Show/hide
Query:  DPPVIEDMANQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF
        DPP++    N    Q     N IL+ADNRDVAM+ Y   AF NL+S I N +P+AA  ELK +MFQMLQT+GQ GG   + P       L++   F+F
Subjt:  DPPVIEDMANQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKF

A0A6J1DMT3 LOW QUALITY PROTEIN: uncharacterized protein LOC1110220072.2e-2372.22Show/hide
Query:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP
        QD P  Q+PPV  DMA +G AN+ GE PN ILLADNRDVAM+NYVT AF+NLNS I+NLLPQAAQ ELK VMF MLQTMGQ GGLT + P
Subjt:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP

A0A6J1DZ19 uncharacterized protein LOC1110248242.2e-0760.71Show/hide
Query:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRI
        QD P   +PPV  D A +G AN+ GE PN ILL DNRDVA++NYVT+AF+NLNS +
Subjt:  QDAPLLQDPPVIEDMANQG-ANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRI

A0A6J1E251 uncharacterized protein LOC1110253022.0e-2473.33Show/hide
Query:  QDAPLLQDPPVIEDMA-NQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP
        QD P  Q+PPV  DMA  + AN+VGE PNLILLADNRDVAM+NYVT+AF+NLNS I+N LPQAAQFELK VMFQ+LQTMGQ GGLT + P
Subjt:  QDAPLLQDPPVIEDMA-NQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGATGCACCTCTCCTACAGGATCCACCTGTGATCGAAGATATGGCTAACCAAGGAGCAAATCAAGTAGGAGAAGCTCCTAATCTAATCCTTTTAGCGGATAACCG
AGATGTAGCCATGCAAAACTATGTCACTTATGCGTTCAATAACTTAAACTCTAGGATAAGTAACCTTTTACCCCAAGCCGCACAGTTCGAGCTTAAGCTGGTCATGTTCC
AAATGTTGCAGACAATGGGACAATCTGGAGGATTGACCACAAAGATCCCTACTCCCATCTCAAATCTTTTATTAAGATTGCTAACGCATTTCAAATTCCTGGTGTTTCCT
TTTTTCTCTCAGGGACAATACAAGAACATGGCTGAATGCACTAGAACCAGATTCGATCACCACTTGGACGGGAATAACGTGTTGACAACAGAGAAGGCCAACAAAGCACC
TATTCCAACGGTGATTCCTAAACCTTCTCCTGCTTTGCAAATTTCTGATATATCTTGTGTTTATTGTGGTGATCATGGGTGTACATCGGTCAGTCGGGTCGATTTTCAGG
CCGAAATCCCCGCCGACCGACCGACGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGATGCACCTCTCCTACAGGATCCACCTGTGATCGAAGATATGGCTAACCAAGGAGCAAATCAAGTAGGAGAAGCTCCTAATCTAATCCTTTTAGCGGATAACCG
AGATGTAGCCATGCAAAACTATGTCACTTATGCGTTCAATAACTTAAACTCTAGGATAAGTAACCTTTTACCCCAAGCCGCACAGTTCGAGCTTAAGCTGGTCATGTTCC
AAATGTTGCAGACAATGGGACAATCTGGAGGATTGACCACAAAGATCCCTACTCCCATCTCAAATCTTTTATTAAGATTGCTAACGCATTTCAAATTCCTGGTGTTTCCT
TTTTTCTCTCAGGGACAATACAAGAACATGGCTGAATGCACTAGAACCAGATTCGATCACCACTTGGACGGGAATAACGTGTTGACAACAGAGAAGGCCAACAAAGCACC
TATTCCAACGGTGATTCCTAAACCTTCTCCTGCTTTGCAAATTTCTGATATATCTTGTGTTTATTGTGGTGATCATGGGTGTACATCGGTCAGTCGGGTCGATTTTCAGG
CCGAAATCCCCGCCGACCGACCGACGTGGTGA
Protein sequenceShow/hide protein sequence
MQDAPLLQDPPVIEDMANQGANQVGEAPNLILLADNRDVAMQNYVTYAFNNLNSRISNLLPQAAQFELKLVMFQMLQTMGQSGGLTTKIPTPISNLLLRLLTHFKFLVFP
FFSQGQYKNMAECTRTRFDHHLDGNNVLTTEKANKAPIPTVIPKPSPALQISDISCVYCGDHGCTSVSRVDFQAEIPADRPTW