; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g29370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g29370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr6:22143001..22145466
RNA-Seq ExpressionMoc06g29370
SyntenyMoc06g29370
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]1.1e-6860.3Show/hide
Query:  MRHRLRTMEEMYAEATRANRTVSLSRVPGAPGE-KEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRE---------------------
        MR ++ TME+MY+E  +A    S S    A  +  E R   L P  +      E  +Y+ +  DLR+HL  K+  + R+                     
Subjt:  MRHRLRTMEEMYAEATRANRTVSLSRVPGAPGE-KEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRE---------------------

Query:  --------LEDSRTRTSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQ
                 E+     S+FD QVEALKA+CEKKE SFD+GDLGES FTSDILEALIP KFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC  FQ
Subjt:  --------LEDSRTRTSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQ

Query:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        IALTGSARLWYRRLPA+SISTYSQLRKEFI QFSSRHYDRKTATHL T RQK+GETLR+YVTRFQEE
Subjt:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

XP_022152854.1 uncharacterized protein LOC111020479 [Momordica charantia]1.5e-6889.4Show/hide
Query:  SRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPA
        S+FD QVEALKARCEKKE SFD+GDLGE +F+SDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA TDAIKCCAFQIALTGSARLWYRRLPA
Subjt:  SRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPA

Query:  KSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        + ISTYSQLRKEFISQFSSRHYDRKT THLAT RQK+GETLR+YVTRF EE
Subjt:  KSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]2.4e-7970.34Show/hide
Query:  LSRVPGAPGEKEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRELEDSRTRT--------------------------------SRFDE
        +  +PGAPGEK    PS+ PG+REP+PN+EGVDYSLRDNDLRKHLT+KKK+AS E EDS + +                                 RFDE
Subjt:  LSRVPGAPGEKEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRELEDSRTRT--------------------------------SRFDE

Query:  QVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSIST
        QVEALKARCEKKE  FD+ DLGES FTSDI+EA IPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC AFQIALTGSARLW RRLPA+SIST
Subjt:  QVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSIST

Query:  YSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETL
        YSQLRKEFI QFS RHYDRKTATHLAT RQK+ ETL
Subjt:  YSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETL

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]1.0e-6992Show/hide
Query:  RFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAK
        +FDEQVEALKARCEKKECSFD+GDLGES FTSDILEA IPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC AFQIALT SARLWYRRLPA+
Subjt:  RFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAK

Query:  SISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        SISTYSQLRKEFISQFSSRHYDRKTATHLAT RQK+GETLR+YVTRF EE
Subjt:  SISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]1.7e-7258.31Show/hide
Query:  RSARHANQELPLAHPKPSKANRGRGGTSRKASRRANPTTDPEALSTLQRELDDMRHRLRTMEEMYAEATRANRTVSLSRVPGAPGEKEGRVPSLHPGDRE
        RSAR    +L  AHPKP KANRGRGG SR+ +  A P    E    LQ+E++ MR ++ TMEEMY E  +A          GA    E R      GD  
Subjt:  RSARHANQELPLAHPKPSKANRGRGGTSRKASRRANPTTDPEALSTLQRELDDMRHRLRTMEEMYAEATRANRTVSLSRVPGAPGEKEGRVPSLHPGDRE

Query:  PVPNNEGVDYSLRDNDLRKHLTE--KKKRASRELEDSR---------TR------TSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKF
           + +      R + LRK  +     K ++++ E S          TR       S+FD QVE LKARCE K  +FD+GDLGES FTSDILEALIP KF
Subjt:  PVPNNEGVDYSLRDNDLRKHLTE--KKKRASRELEDSR---------TR------TSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKF

Query:  KTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKY
        KTPTMKPYDGSKDPKDYVEVFEGLM FQA TDAIK  AFQIALT SARLWYRRLPA+SISTYSQLRKEF SQFSSRHY+RKTATHLAT RQK+ ETLR+Y
Subjt:  KTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKY

Query:  VTRFQEE
        VT FQEE
Subjt:  VTRFQEE

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196345.5e-6960.3Show/hide
Query:  MRHRLRTMEEMYAEATRANRTVSLSRVPGAPGE-KEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRE---------------------
        MR ++ TME+MY+E  +A    S S    A  +  E R   L P  +      E  +Y+ +  DLR+HL  K+  + R+                     
Subjt:  MRHRLRTMEEMYAEATRANRTVSLSRVPGAPGE-KEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRE---------------------

Query:  --------LEDSRTRTSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQ
                 E+     S+FD QVEALKA+CEKKE SFD+GDLGES FTSDILEALIP KFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC  FQ
Subjt:  --------LEDSRTRTSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQ

Query:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        IALTGSARLWYRRLPA+SISTYSQLRKEFI QFSSRHYDRKTATHL T RQK+GETLR+YVTRFQEE
Subjt:  IALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

A0A6J1DHB3 uncharacterized protein LOC1110204797.2e-6989.4Show/hide
Query:  SRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPA
        S+FD QVEALKARCEKKE SFD+GDLGE +F+SDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFE LMDFQA TDAIKCCAFQIALTGSARLWYRRLPA
Subjt:  SRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPA

Query:  KSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        + ISTYSQLRKEFISQFSSRHYDRKT THLAT RQK+GETLR+YVTRF EE
Subjt:  KSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

A0A6J1DPC9 uncharacterized protein LOC1110222801.2e-7970.34Show/hide
Query:  LSRVPGAPGEKEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRELEDSRTRT--------------------------------SRFDE
        +  +PGAPGEK    PS+ PG+REP+PN+EGVDYSLRDNDLRKHLT+KKK+AS E EDS + +                                 RFDE
Subjt:  LSRVPGAPGEKEGRVPSLHPGDREPVPNNEGVDYSLRDNDLRKHLTEKKKRASRELEDSRTRT--------------------------------SRFDE

Query:  QVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSIST
        QVEALKARCEKKE  FD+ DLGES FTSDI+EA IPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC AFQIALTGSARLW RRLPA+SIST
Subjt:  QVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSIST

Query:  YSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETL
        YSQLRKEFI QFS RHYDRKTATHLAT RQK+ ETL
Subjt:  YSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETL

A0A6J1DY58 uncharacterized protein LOC1110256635.0e-7092Show/hide
Query:  RFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAK
        +FDEQVEALKARCEKKECSFD+GDLGES FTSDILEA IPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQA TDAIKC AFQIALT SARLWYRRLPA+
Subjt:  RFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAK

Query:  SISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE
        SISTYSQLRKEFISQFSSRHYDRKTATHLAT RQK+GETLR+YVTRF EE
Subjt:  SISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE

A0A6J1DZJ1 uncharacterized protein LOC1110257388.2e-7358.31Show/hide
Query:  RSARHANQELPLAHPKPSKANRGRGGTSRKASRRANPTTDPEALSTLQRELDDMRHRLRTMEEMYAEATRANRTVSLSRVPGAPGEKEGRVPSLHPGDRE
        RSAR    +L  AHPKP KANRGRGG SR+ +  A P    E    LQ+E++ MR ++ TMEEMY E  +A          GA    E R      GD  
Subjt:  RSARHANQELPLAHPKPSKANRGRGGTSRKASRRANPTTDPEALSTLQRELDDMRHRLRTMEEMYAEATRANRTVSLSRVPGAPGEKEGRVPSLHPGDRE

Query:  PVPNNEGVDYSLRDNDLRKHLTE--KKKRASRELEDSR---------TR------TSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKF
           + +      R + LRK  +     K ++++ E S          TR       S+FD QVE LKARCE K  +FD+GDLGES FTSDILEALIP KF
Subjt:  PVPNNEGVDYSLRDNDLRKHLTE--KKKRASRELEDSR---------TR------TSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKF

Query:  KTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKY
        KTPTMKPYDGSKDPKDYVEVFEGLM FQA TDAIK  AFQIALT SARLWYRRLPA+SISTYSQLRKEF SQFSSRHY+RKTATHLAT RQK+ ETLR+Y
Subjt:  KTPTMKPYDGSKDPKDYVEVFEGLMDFQATTDAIKCCAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKY

Query:  VTRFQEE
        VT FQEE
Subjt:  VTRFQEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAAGAGAAGGAAGAAATGCTTGATGAATTTGGTGGAGAAGCTGCTGGAATTTATAGTTGTGCAGAATTGGTTAGTGGAACACTTCTTCTACACGTATGCATCGGT
TGGAATTACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGGATTTCTGCAGCCTACCAGGCGCCTGACGCCTCCAATGAAGGTCCACC
TCGGCCCTGCCGAGGAGACCGGGTTCGTCCATTATGAAAGACTATGGGTGTCAAGGTTCGACCTGGCTGGGGTCCGACCTGCTCGGAACCCGACAGGTCGAGCAGGGCAA
GACGGAGACCTTCCACGGAGATCGGCCCGCCATGCGAACCAGGAGTTACCCCTTGCTCACCCTAAACCCTCAAAAGCCAACCGAGGCCGAGGAGGGACCTCCAGAAAGGC
CTCCCGAAGGGCCAATCCGACAACGGACCCTGAGGCTTTGTCTACTCTCCAGCGCGAATTGGATGACATGCGCCATCGGTTGCGCACGATGGAAGAAATGTACGCCGAGG
CGACGCGGGCCAATCGGACAGTGTCCCTCTCCCGGGTCCCAGGCGCACCTGGAGAAAAGGAAGGACGGGTTCCATCTCTTCATCCTGGCGACCGCGAGCCCGTTCCCAAT
AATGAGGGAGTGGACTATAGCTTGCGGGACAATGATCTTAGAAAGCACCTCACTGAAAAGAAGAAGAGAGCATCTCGGGAGCTGGAAGACTCTCGAACTCGGACCTCAAG
GTTCGATGAGCAGGTCGAGGCACTCAAGGCCAGGTGCGAGAAGAAAGAGTGCTCGTTCGACAATGGCGACTTGGGAGAATCGACATTCACCTCGGACATCTTGGAGGCTC
TAATCCCTCCGAAGTTCAAAACTCCCACGATGAAACCTTATGATGGGTCTAAGGACCCAAAGGACTATGTTGAGGTTTTCGAGGGCCTCATGGACTTTCAAGCGACAACA
GATGCAATAAAATGCTGCGCCTTCCAGATCGCGCTTACCGGCAGCGCGCGCCTGTGGTACCGGAGACTGCCGGCTAAGTCGATCTCGACCTATTCTCAACTGAGAAAGGA
ATTCATTAGTCAATTCTCTTCTCGGCATTATGATAGAAAGACAGCGACTCACCTCGCCACCAACAGACAGAAGAAAGGTGAGACGCTGAGAAAGTATGTCACAAGGTTCC
AGGAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCAAGAGAAGGAAGAAATGCTTGATGAATTTGGTGGAGAAGCTGCTGGAATTTATAGTTGTGCAGAATTGGTTAGTGGAACACTTCTTCTACACGTATGCATCGGT
TGGAATTACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGGATTTCTGCAGCCTACCAGGCGCCTGACGCCTCCAATGAAGGTCCACC
TCGGCCCTGCCGAGGAGACCGGGTTCGTCCATTATGAAAGACTATGGGTGTCAAGGTTCGACCTGGCTGGGGTCCGACCTGCTCGGAACCCGACAGGTCGAGCAGGGCAA
GACGGAGACCTTCCACGGAGATCGGCCCGCCATGCGAACCAGGAGTTACCCCTTGCTCACCCTAAACCCTCAAAAGCCAACCGAGGCCGAGGAGGGACCTCCAGAAAGGC
CTCCCGAAGGGCCAATCCGACAACGGACCCTGAGGCTTTGTCTACTCTCCAGCGCGAATTGGATGACATGCGCCATCGGTTGCGCACGATGGAAGAAATGTACGCCGAGG
CGACGCGGGCCAATCGGACAGTGTCCCTCTCCCGGGTCCCAGGCGCACCTGGAGAAAAGGAAGGACGGGTTCCATCTCTTCATCCTGGCGACCGCGAGCCCGTTCCCAAT
AATGAGGGAGTGGACTATAGCTTGCGGGACAATGATCTTAGAAAGCACCTCACTGAAAAGAAGAAGAGAGCATCTCGGGAGCTGGAAGACTCTCGAACTCGGACCTCAAG
GTTCGATGAGCAGGTCGAGGCACTCAAGGCCAGGTGCGAGAAGAAAGAGTGCTCGTTCGACAATGGCGACTTGGGAGAATCGACATTCACCTCGGACATCTTGGAGGCTC
TAATCCCTCCGAAGTTCAAAACTCCCACGATGAAACCTTATGATGGGTCTAAGGACCCAAAGGACTATGTTGAGGTTTTCGAGGGCCTCATGGACTTTCAAGCGACAACA
GATGCAATAAAATGCTGCGCCTTCCAGATCGCGCTTACCGGCAGCGCGCGCCTGTGGTACCGGAGACTGCCGGCTAAGTCGATCTCGACCTATTCTCAACTGAGAAAGGA
ATTCATTAGTCAATTCTCTTCTCGGCATTATGATAGAAAGACAGCGACTCACCTCGCCACCAACAGACAGAAGAAAGGTGAGACGCTGAGAAAGTATGTCACAAGGTTCC
AGGAGGAGTAG
Protein sequenceShow/hide protein sequence
MTKRRKKCLMNLVEKLLEFIVVQNWLVEHFFYTYASVGITKTHWKTRFIKGKVGRKPGFLQPTRRLTPPMKVHLGPAEETGFVHYERLWVSRFDLAGVRPARNPTGRAGQ
DGDLPRRSARHANQELPLAHPKPSKANRGRGGTSRKASRRANPTTDPEALSTLQRELDDMRHRLRTMEEMYAEATRANRTVSLSRVPGAPGEKEGRVPSLHPGDREPVPN
NEGVDYSLRDNDLRKHLTEKKKRASRELEDSRTRTSRFDEQVEALKARCEKKECSFDNGDLGESTFTSDILEALIPPKFKTPTMKPYDGSKDPKDYVEVFEGLMDFQATT
DAIKCCAFQIALTGSARLWYRRLPAKSISTYSQLRKEFISQFSSRHYDRKTATHLATNRQKKGETLRKYVTRFQEE