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Moc06g29530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g29530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr6:22222187..22224096
RNA-Seq ExpressionMoc06g29530
SyntenyMoc06g29530
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN82302.1 hypothetical protein VITISV_013932 [Vitis vinifera]3.0e-0446.67Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        GH  LQWSQS+  F+YG+G ++++  +A  P++ +P FRKW++EN
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

PIN18143.1 hypothetical protein CDL12_09191 [Handroanthus impetiginosus]2.7e-0548.89Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        G+  +QWSQS+KMF+ GRG ++++ ++  PPK DDPK+R W+++N
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

RVW33967.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.1e-0548.89Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        GH  LQWSQS+ +F+YG+G ++++  +A  PK+ +P FRKW++EN
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

RVW35033.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.0e-0527.22Show/hide
Query:  AAVATAATVTVDIFTIFAGH-IN----LQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVENMNEQRKGHQIIVIKRD-----------MSKKP
        A  + +A+ T DI     GH +N    +QW+QS+++F+ G+G E+++      PK DDP +R W++EN  + R+G    V   +            SK+ 
Subjt:  AAVATAATVTVDIFTIFAGH-IN----LQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVENMNEQRKGHQIIVIKRD-----------MSKKP

Query:  AGKYMENQQIRSQTLPNQIG----KPGGMLLYLKLDSTLCNLSVRVANGTPAKVTGIG
             +  Q   Q+    IG      G ++++ +      N SVR+A+GT ++    G
Subjt:  AGKYMENQQIRSQTLPNQIG----KPGGMLLYLKLDSTLCNLSVRVANGTPAKVTGIG

XP_023773158.1 uncharacterized protein LOC111921810 [Lactuca sativa]2.7e-0548.94Show/hide
Query:  FAGHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        F GH  LQWSQS+ M++ G+G E+++  + E PKSDDPK++ W+ +N
Subjt:  FAGHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

TrEMBL top hitse value%identityAlignment
A0A2G9HL36 Uncharacterized protein1.3e-0548.89Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        G+  +QWSQS+KMF+ GRG ++++ ++  PPK DDPK+R W+++N
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

A0A438DEQ3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-0548.89Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        GH  LQWSQS+ +F+YG+G ++++  +A  PK+ +P FRKW++EN
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

A0A438DHW1 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-0527.22Show/hide
Query:  AAVATAATVTVDIFTIFAGH-IN----LQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVENMNEQRKGHQIIVIKRD-----------MSKKP
        A  + +A+ T DI     GH +N    +QW+QS+++F+ G+G E+++      PK DDP +R W++EN  + R+G    V   +            SK+ 
Subjt:  AAVATAATVTVDIFTIFAGH-IN----LQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVENMNEQRKGHQIIVIKRD-----------MSKKP

Query:  AGKYMENQQIRSQTLPNQIG----KPGGMLLYLKLDSTLCNLSVRVANGTPAKVTGIG
             +  Q   Q+    IG      G ++++ +      N SVR+A+GT ++    G
Subjt:  AGKYMENQQIRSQTLPNQIG----KPGGMLLYLKLDSTLCNLSVRVANGTPAKVTGIG

A0A438FBE0 Retrotrans_gag domain-containing protein1.5e-0446.67Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        GH  LQWSQS+ +F+ G+G +++++ KA  P++ +P FRKW++EN
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

A0A438IYA6 Retrotrans_gag domain-containing protein1.5e-0446.67Show/hide
Query:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN
        GH  LQWSQS+  F+YG+G ++++  +A  P++ +P FRKW++EN
Subjt:  GHINLQWSQSIKMFMYGRGLEDHIMSKAEPPKSDDPKFRKWRVEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCATCTACTCTCAAATCTATTCGCAGCAACCCAATCACCTGATTCCACCACCGATCTCATCTTCTCTCAGATCAGTTCCTCAGCCCAATCATCGTCAATCATT
GCTGCAAAGCCCAATCTCTCTCAGATCTGTTTATTTCTTCCATAACGTATTCATCGTCGCTGCAGTTTCTGCTGATCTCGCTGCCACCGCAGCGGTCGCCACTGCCGCTA
CAGTCACCGTTGATATATTCACTATTTTTGCAGGCCACATTAATCTTCAGTGGTCTCAATCAATTAAGATGTTCATGTATGGTCGTGGACTAGAAGATCATATCATGAGT
AAAGCAGAACCGCCGAAATCTGATGATCCAAAATTTCGTAAATGGAGGGTTGAAAATATGAATGAGCAGCGCAAAGGGCACCAGATCATTGTCATAAAGCGGGACATGTC
AAAGAAACCTGCTGGAAAATACATGGAAAACCAGCAAATTAGAAGCCAAACACTACCAAATCAGATCGGGAAACCAGGAGGAATGTTATTGTATCTGAAACTTGATAGCA
CACTTTGTAATCTTTCTGTTAGAGTTGCTAATGGTACACCTGCTAAAGTGACCGGTATTGGAAGTATTCAGATATCAAGCTCTCTCATCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCATCTACTCTCAAATCTATTCGCAGCAACCCAATCACCTGATTCCACCACCGATCTCATCTTCTCTCAGATCAGTTCCTCAGCCCAATCATCGTCAATCATT
GCTGCAAAGCCCAATCTCTCTCAGATCTGTTTATTTCTTCCATAACGTATTCATCGTCGCTGCAGTTTCTGCTGATCTCGCTGCCACCGCAGCGGTCGCCACTGCCGCTA
CAGTCACCGTTGATATATTCACTATTTTTGCAGGCCACATTAATCTTCAGTGGTCTCAATCAATTAAGATGTTCATGTATGGTCGTGGACTAGAAGATCATATCATGAGT
AAAGCAGAACCGCCGAAATCTGATGATCCAAAATTTCGTAAATGGAGGGTTGAAAATATGAATGAGCAGCGCAAAGGGCACCAGATCATTGTCATAAAGCGGGACATGTC
AAAGAAACCTGCTGGAAAATACATGGAAAACCAGCAAATTAGAAGCCAAACACTACCAAATCAGATCGGGAAACCAGGAGGAATGTTATTGTATCTGAAACTTGATAGCA
CACTTTGTAATCTTTCTGTTAGAGTTGCTAATGGTACACCTGCTAAAGTGACCGGTATTGGAAGTATTCAGATATCAAGCTCTCTCATCTTTTAG
Protein sequenceShow/hide protein sequence
MSFIYSQIYSQQPNHLIPPPISSSLRSVPQPNHRQSLLQSPISLRSVYFFHNVFIVAAVSADLAATAAVATAATVTVDIFTIFAGHINLQWSQSIKMFMYGRGLEDHIMS
KAEPPKSDDPKFRKWRVENMNEQRKGHQIIVIKRDMSKKPAGKYMENQQIRSQTLPNQIGKPGGMLLYLKLDSTLCNLSVRVANGTPAKVTGIGSIQISSSLIF