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Moc06g29600 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g29600
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr6:22305967..22312710
RNA-Seq ExpressionMoc06g29600
SyntenyMoc06g29600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.7e-1637.65Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHSLF  IDDTLP   K +       N +I NPKY  W  +D AL TLINATLS + L+                  L+ KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN L   +N F TS+RTR     LE+LH L+ +EE  +  +   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1637.65Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHS F  IDDTLP   K +       N +I NP+Y  W  +  AL TLINATLS + L+                  L++KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN LP  +N FRTS+RTR     LE+LH L+  EE  + A+   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1531.6Show/hide
Query:  SNHKKCKDKGGNCHIQFVRCSSEIILLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEENGQIPNPKYSLWHIQDYALTTLINATLSQTT
        SN         N     V  S+   L+S   D T   L + ++T +LKAH LF FID T P           I NP Y  W  +D AL T+INATLS   
Subjt:  SNHKKCKDKGGNCHIQFVRCSSEIILLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEENGQIPNPKYSLWHIQDYALTTLINATLSQTT

Query:  LS------------------------------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSF
        L+                                                      + +KL  +S  + D+D++IY LN LP +YN FRTS+RTR TP  
Subjt:  LS------------------------------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSF

Query:  LEDLHVLMKVEEFAIRAEMKPLDTLSLATAI
         E+LHVL+K EE A+  + K  D     TA+
Subjt:  LEDLHVLMKVEEFAIRAEMKPLDTLSLATAI

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-1531.6Show/hide
Query:  SNHKKCKDKGGNCHIQFVRCSSEIILLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEENGQIPNPKYSLWHIQDYALTTLINATLSQTT
        SN         N     V  S+   L+S   D T   L + ++T +LKAH LF FID T P           I NP Y  W  +D AL T+INATLS   
Subjt:  SNHKKCKDKGGNCHIQFVRCSSEIILLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEENGQIPNPKYSLWHIQDYALTTLINATLSQTT

Query:  LS------------------------------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSF
        L+                                                      + +KL  +S  + D+D++IY LN LP +YN FRTS+RTR TP  
Subjt:  LS------------------------------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSF

Query:  LEDLHVLMKVEEFAIRAEMKPLDTLSLATAI
         E+LHVL+K EE A+  + K  D     TA+
Subjt:  LEDLHVLMKVEEFAIRAEMKPLDTLSLATAI

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-1537.06Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHSLF  IDDTLP   K +       N +I NP+Y  W  +D AL TLINATLS + L+                  L+ KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN L   +N F TS+RTR     LE+LH L+ +EE  +  +   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein1.8e-1637.65Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHSLF  IDDTLP   K +       N +I NPKY  W  +D AL TLINATLS + L+                  L+ KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN L   +N F TS+RTR     LE+LH L+ +EE  +  +   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

A0A5A7VGG0 Retrotransposon protein6.2e-1737.65Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHS F  IDDTLP   K +       N +I NP+Y  W  +  AL TLINATLS + L+                  L++KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN LP  +N FRTS+RTR     LE+LH L+  EE  + A+   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

A0A5D3BEU0 Putative mitochondrial protein5.3e-1637.06Show/hide
Query:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT
        D T   L + +V+ ILKAHSLF  IDDTLP   K +       N +I NP+Y  W  +D AL TLINATLS + L+                  L+ KL 
Subjt:  DQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------LMNKLT

Query:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF
          S+ ++D++++++TLN L   +N F TS+RTR     LE+LH L+ +EE  +  +   ++ +  A A F
Subjt:  VISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIF

A0A5J4ZT09 Flavin-containing monooxygenase1.3e-1431.47Show/hide
Query:  SGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS--------------------
        SG   +    +   R++ ILKAHSL  +ID T P  +K +++       QI NP+Y +W+ QD AL TL+NATLSQT LS                    
Subjt:  SGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS--------------------

Query:  ---------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMK
                                           + L  +SV I+D+D++IY LN LP +YN F+TS+RT+     LE+++ ++K+EE  I +  K
Subjt:  ---------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMK

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein1.7e-1430.65Show/hide
Query:  LLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------
        L++   D +     + +++ ILKAHSL  +ID T P  +K +++       QI NP+Y +W+ QD AL TL+NATLSQT LS                  
Subjt:  LLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEE-----NGQIPNPKYSLWHIQDYALTTLINATLSQTTLS------------------

Query:  -----------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMK
                                             + L  +SV I+D+D++IY LN LP +YN F+TS+RT+     LE+++ ++K+EE  I +  K
Subjt:  -----------------------------------LMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATACTATTCACCGGCATGATTGCTGAATTTAGCAATGACAAGCCTAATCTTCTTATTCTCACTATATGTATAGCAATCAAACACACGTTCTATCTACCT
CTTCCTTTGCAAGTCCGAGCTGAGGTATCTCATGTAACCATTGGTAACCATGCAACTGAATCTGAATTTGCCAATAAATATAAAAATCATTTTAGTACCCAAGGA
GTGCATCAGTTCACGAGCAGAAGTTCGCACTTGTTGCCTTTCGATCTTGAGATCGAGAAAACCTGCAAAAGGTCAAGCAAGAACATGGCTAAATATTCTTCCTCT
AGATACTATCACTGCATGACAAACCTTGGTGGACAAATTCCTCGTGAAGTACATTCCAACCACAAGAAATGCAAAGATAAGGGAGGAAATTGTCACATTCAGTTT
GTACGTTGTTCTAGCGAGATTATTCTCCTCTCAGGCTCGAAAGATCAGACGAAGGTTAAGCTAGGAGAACTTAGGGTTACTCAAATCCTCAAAGCACACTCCTTA
TTTGATTTTATTGATGATACTCTTCCCTATGGAGACAAAAAGATTGAGGAAAATGGTCAAATTCCTAACCCAAAATACAGTTTGTGGCACATTCAAGATTACGCT
CTCACCACTCTCATCAATGCCACCTTATCCCAAACGACATTGTCTCTAATGAACAAGCTCACCGTCATTTCAGTCCATATTCAGGACAAGGATGTCATGATATAT
ACACTCAATGACCTTCCATTTGACTACAATATCTTTCGCACTTCCCTGCGAACACGCGTCACTCCCTCATTCTTAGAAGATCTTCATGTTCTAATGAAGGTCGAG
GAGTTTGCTATCCGAGCAGAGATGAAACCATTAGACACTCTCTCTCTTGCTACTGCCATTTTTTGCTTAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATACTATTCACCGGCATGATTGCTGAATTTAGCAATGACAAGCCTAATCTTCTTATTCTCACTATATGTATAGCAATCAAACACACGTTCTATCTACCT
CTTCCTTTGCAAGTCCGAGCTGAGGTATCTCATGTAACCATTGGTAACCATGCAACTGAATCTGAATTTGCCAATAAATATAAAAATCATTTTAGTACCCAAGGA
GTGCATCAGTTCACGAGCAGAAGTTCGCACTTGTTGCCTTTCGATCTTGAGATCGAGAAAACCTGCAAAAGGTCAAGCAAGAACATGGCTAAATATTCTTCCTCT
AGATACTATCACTGCATGACAAACCTTGGTGGACAAATTCCTCGTGAAGTACATTCCAACCACAAGAAATGCAAAGATAAGGGAGGAAATTGTCACATTCAGTTT
GTACGTTGTTCTAGCGAGATTATTCTCCTCTCAGGCTCGAAAGATCAGACGAAGGTTAAGCTAGGAGAACTTAGGGTTACTCAAATCCTCAAAGCACACTCCTTA
TTTGATTTTATTGATGATACTCTTCCCTATGGAGACAAAAAGATTGAGGAAAATGGTCAAATTCCTAACCCAAAATACAGTTTGTGGCACATTCAAGATTACGCT
CTCACCACTCTCATCAATGCCACCTTATCCCAAACGACATTGTCTCTAATGAACAAGCTCACCGTCATTTCAGTCCATATTCAGGACAAGGATGTCATGATATAT
ACACTCAATGACCTTCCATTTGACTACAATATCTTTCGCACTTCCCTGCGAACACGCGTCACTCCCTCATTCTTAGAAGATCTTCATGTTCTAATGAAGGTCGAG
GAGTTTGCTATCCGAGCAGAGATGAAACCATTAGACACTCTCTCTCTTGCTACTGCCATTTTTTGCTTAACATGA
Protein sequenceShow/hide protein sequence
MSILFTGMIAEFSNDKPNLLILTICIAIKHTFYLPLPLQVRAEVSHVTIGNHATESEFANKYKNHFSTQGVHQFTSRSSHLLPFDLEIEKTCKRSSKNMAKYSSS
RYYHCMTNLGGQIPREVHSNHKKCKDKGGNCHIQFVRCSSEIILLSGSKDQTKVKLGELRVTQILKAHSLFDFIDDTLPYGDKKIEENGQIPNPKYSLWHIQDYA
LTTLINATLSQTTLSLMNKLTVISVHIQDKDVMIYTLNDLPFDYNIFRTSLRTRVTPSFLEDLHVLMKVEEFAIRAEMKPLDTLSLATAIFCLT