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Moc06g29800 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g29800
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:22438408..22439775
RNA-Seq ExpressionMoc06g29800
SyntenyMoc06g29800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7561662.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]7.7e-1532.91Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI
        G+ KF   +F+F +MQ++D L  +K+H+ L  +P  M  ++ + +D                                   YEKPSAN K+ L  K F++
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI

Query:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         MEEG  V +H+NE   I N+   + I+ D+EV+A+ L+  L +SWE M+  VSNS+G
Subjt:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

KAG7584790.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]4.5e-1533.54Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI
        G+ KF   +F+F +MQ++D L  +K+H+ L  +P  M  ++ + +D                                   YEKPSAN K+ L  K F++
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI

Query:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         MEEG  V +H+NE   I N+   + I+ D+EV+A+ LL  L +SWE M+  VSNS+G
Subjt:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]4.5e-1533.54Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI
        G+ KF   +F+F +MQ++D L  +K+H+ L  +P  M  ++ + +D                                   YEKPSAN K+ L  K F++
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNI

Query:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         MEEG  V +H+NE   I N+   + I+ D+EV+A+ LL  L +SWE M+  VSNS+G
Subjt:  HMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

VFQ61084.1 unnamed protein product [Cuscuta campestris]1.7e-1435.48Show/hide
Query:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKD------------CNKMDE----------------------YEKPSANTKILLWTKYFNIHME
        KF   NFS+ KMQ++DLL  + +   L ++P  M D D            C  + +                      YEKPSA  K+ L  +  N  M+
Subjt:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKD------------CNKMDE----------------------YEKPSANTKILLWTKYFNIHME

Query:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
        EGT +  HIN+L +I  +P  +GIK D+EV+A+ LL+ LLDSW    TTV+ S+G
Subjt:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

VFQ78184.1 unnamed protein product [Cuscuta campestris]1.7e-1439.69Show/hide
Query:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNIFNKPEGMGI
        KF   NFS+ KMQ++DLL  + +   L ++P  M D D    D           YEKPSA  K+ L  +  N  M+EGT +  HIN+L +I  +   +GI
Subjt:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNIFNKPEGMGI

Query:  KVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
        K D+EV+A+ LL+ L DSW    T V+ S+G
Subjt:  KVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

TrEMBL top hitse value%identityAlignment
A0A0D3AEM1 CCHC-type domain-containing protein3.7e-1533.55Show/hide
Query:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNIHME
        KF   +++F +MQ++D L  +K+H+ L ++P  M   +   +D                                   YEKPSAN+K+ L  K F++ ME
Subjt:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNIHME

Query:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
        EG LV +HINE   I N+   + I+ ++EV+A+ LL  L +SWE+M+  VSNS+G
Subjt:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

A0A0D3CS45 Uncharacterized protein2.2e-1534.19Show/hide
Query:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNIHME
        KF   NF+F +MQ++D L  +K+H+ L ++P  M   +   +D                                   YEKPSAN K+ L  K F++ ME
Subjt:  KFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKYFNIHME

Query:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
        EG LV +H+NE   I N+   + I+ ++EV+A+ LL  L +SWE M+  VSNS+G
Subjt:  EGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

A0A2N9EUG1 Uncharacterized protein4.4e-1637.86Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI
        G+ KF   +F + +MQ++D L  +K+H   L E+P  M D +   +D                YEKPSAN K+ L  K FN+ M EGT V  H+NE   I
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI

Query:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         N+   + I+ D+E++A+ +L  L +SWE M+  VSNS G
Subjt:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

A0A2N9GTI4 Uncharacterized protein4.4e-1637.86Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI
        G+ KF   +F + +MQ++D L  +K+H   L E+P  M D +   +D                YEKPSAN K+ L  K FN+ M EGT V  H+NE   I
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI

Query:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         N+   + I+ D+E++A+ +L  L +SWE M+  VSNS G
Subjt:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

A0A2N9HHD8 Uncharacterized protein4.4e-1637.86Show/hide
Query:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI
        G+ KF   +F + +MQ++D L  +K+H   L E+P  M D +   +D                YEKPSAN K+ L  K FN+ M EGT V  H+NE   I
Subjt:  GVLKFTRENFSFLKMQVKDLLTCEKIH-KTLRERPAGMIDKDCNKMDE---------------YEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNI

Query:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG
         N+   + I+ D+E++A+ +L  L +SWE M+  VSNS G
Subjt:  FNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0625Show/hide
Query:  VLKFTREN-FSFLKMQVKDLLTCEKIHKTL---RERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKY
        V KF  +N FS  + +++DLL  + +HK L    ++P  M  +D   +DE                                  Y   +   K+ L  + 
Subjt:  VLKFTREN-FSFLKMQVKDLLTCEKIHKTL---RERPAGMIDKDCNKMDE----------------------------------YEKPSANTKILLWTKY

Query:  FNIHMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLGIIVTRDL
        + +HM EGT   SH+N    +  +   +G+K++EE KA+ LL  L  S++ + TT+ +    I  +D+
Subjt:  FNIHMEEGTLVNSHINELTNIFNKPEGMGIKVDEEVKAMRLLTYLLDSWETMKTTVSNSLGIIVTRDL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACAAATATCATACACACCATTACTACGAAGGAGTTTTGAAGTTCACTAGAGAGAATTTCAGTTTTTTGAAGATGCAAGTAAAAGATCTTCTTACATGCGAGAA
GATACATAAGACTTTAAGGGAAAGACCAGCGGGGATGATTGACAAGGATTGTAATAAGATGGATGAGTATGAGAAACCTTCTGCCAACACCAAAATACTTCTCTGGACAA
AGTATTTTAATATCCACATGGAGGAGGGAACCTTGGTGAATTCTCATATTAATGAGCTCACTAACATATTTAACAAACCGGAAGGGATGGGTATCAAGGTCGATGAGGAG
GTGAAGGCTATGAGGCTGCTGACATATTTACTTGACAGTTGGGAGACAATGAAGACCACGGTGTCGAATTCGTTGGGGATAATAGTCACAAGAGATCTTCCATTTATGTA
TCATGTAGAGTTTGGAGTTGCCAAGGGTTCACTGAGACAGATAATGCACAAAGTAGCTGCAGATGGTTCAAGGCGAGACCTTAGAGGACCAGCAGCATTGATGGCCATAA
AAGATCAAAAGAATCTGCTATCAGCTCAAATTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACAAATATCATACACACCATTACTACGAAGGAGTTTTGAAGTTCACTAGAGAGAATTTCAGTTTTTTGAAGATGCAAGTAAAAGATCTTCTTACATGCGAGAA
GATACATAAGACTTTAAGGGAAAGACCAGCGGGGATGATTGACAAGGATTGTAATAAGATGGATGAGTATGAGAAACCTTCTGCCAACACCAAAATACTTCTCTGGACAA
AGTATTTTAATATCCACATGGAGGAGGGAACCTTGGTGAATTCTCATATTAATGAGCTCACTAACATATTTAACAAACCGGAAGGGATGGGTATCAAGGTCGATGAGGAG
GTGAAGGCTATGAGGCTGCTGACATATTTACTTGACAGTTGGGAGACAATGAAGACCACGGTGTCGAATTCGTTGGGGATAATAGTCACAAGAGATCTTCCATTTATGTA
TCATGTAGAGTTTGGAGTTGCCAAGGGTTCACTGAGACAGATAATGCACAAAGTAGCTGCAGATGGTTCAAGGCGAGACCTTAGAGGACCAGCAGCATTGATGGCCATAA
AAGATCAAAAGAATCTGCTATCAGCTCAAATTAAATAG
Protein sequenceShow/hide protein sequence
MGDKYHTHHYYEGVLKFTRENFSFLKMQVKDLLTCEKIHKTLRERPAGMIDKDCNKMDEYEKPSANTKILLWTKYFNIHMEEGTLVNSHINELTNIFNKPEGMGIKVDEE
VKAMRLLTYLLDSWETMKTTVSNSLGIIVTRDLPFMYHVEFGVAKGSLRQIMHKVAADGSRRDLRGPAALMAIKDQKNLLSAQIK