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Moc06g30180 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g30180
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr6:22706667..22707668
RNA-Seq ExpressionMoc06g30180
SyntenyMoc06g30180
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054657.1 uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa]4.1e-2442.53Show/hide
Query:  KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPIS
        KEYAQRW E   Q+  PL +KE        +T R      ++            +        N S + QN    P       ++R   K+  F  IP+S
Subjt:  KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPIS

Query:  YTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ
        YTELL QL + + +A VP E LQPPYPKWYDP V+ +YHAG VGHSTENC  LK KVQ L++ARWLKF K + +
Subjt:  YTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]6.3e-2560Show/hide
Query:  SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG
        ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG + HSTENCT LK++VQ L++A W  F KE+G
Subjt:  SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]1.3e-7871.11Show/hide
Query:  MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKG
        MRQDID IQ+QV +I NVLKNIVTV   SQPNNLVEP++NSSPRVDPPLCQ  EGF  H+SSH+AQLSKKGQQ PT CQVEFT +D QT KV +S+  KG
Subjt:  MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKG

Query:  KERENVTNGNAEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQ
        +E+ENVT             QRWG+AIEQLPVPLINKE  P+ N SS KRKNKV AV+SKRK ++QQG   Y+PSTV +NS+ LQ+DPQTLP+NHSSRRQ
Subjt:  KERENVTNGNAEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQ

Query:  LKRESFHSIPISYTELLSQLFQGNL
        LKRESFHSIP SYTELLSQLFQGNL
Subjt:  LKRESFHSIPISYTELLSQLFQGNL

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.1e-2458.16Show/hide
Query:  DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH
        +N S+R+Q     F  IP++YTELL QLFQ N LAPVPV+ +QPPYP WYD   RCDYHAG +GHSTENCT+LK++VQ L++A  L F KE+   +K+
Subjt:  DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.2e-2651.79Show/hide
Query:  PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLM
        P++        Q++     +  ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L+
Subjt:  PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLM

Query:  RARWLKFSKEDG
        +A WL F KE+G
Subjt:  RARWLKFSKEDG

TrEMBL top hitse value%identityAlignment
A0A5A7UJ84 Retrotrans_gag domain-containing protein2.0e-2442.53Show/hide
Query:  KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPIS
        KEYAQRW E   Q+  PL +KE        +T R      ++            +        N S + QN    P       ++R   K+  F  IP+S
Subjt:  KEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVN-SLALQN---DPQTLPDNHSSRRQLKRESFHSIPIS

Query:  YTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ
        YTELL QL + + +A VP E LQPPYPKWYDP V+ +YHAG VGHSTENC  LK KVQ L++ARWLKF K + +
Subjt:  YTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQ

A0A6J1D099 Ribonuclease H3.1e-2560Show/hide
Query:  SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG
        ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG + HSTENCT LK++VQ L++A W  F KE+G
Subjt:  SSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDG

A0A6J1DHS7 uncharacterized protein LOC1110210296.3e-7971.11Show/hide
Query:  MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKG
        MRQDID IQ+QV +I NVLKNIVTV   SQPNNLVEP++NSSPRVDPPLCQ  EGF  H+SSH+AQLSKKGQQ PT CQVEFT +D QT KV +S+  KG
Subjt:  MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKG

Query:  KERENVTNGNAEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQ
        +E+ENVT             QRWG+AIEQLPVPLINKE  P+ N SS KRKNKV AV+SKRK ++QQG   Y+PSTV +NS+ LQ+DPQTLP+NHSSRRQ
Subjt:  KERENVTNGNAEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQ

Query:  LKRESFHSIPISYTELLSQLFQGNL
        LKRESFHSIP SYTELLSQLFQGNL
Subjt:  LKRESFHSIPISYTELLSQLFQGNL

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.0e-2458.16Show/hide
Query:  DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH
        +N S+R+Q     F  IP++YTELL QLFQ N LAPVPV+ +QPPYP WYD   RCDYHAG +GHSTENCT+LK++VQ L++A  L F KE+   +K+
Subjt:  DNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKH

A0A6J1E2J7 Ribonuclease H5.6e-2751.79Show/hide
Query:  PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLM
        P++        Q++     +  ++R   K+  F  IP++YTELL QLFQ N LAPVPV+ +QPPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L+
Subjt:  PSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLM

Query:  RARWLKFSKEDG
        +A WL F KE+G
Subjt:  RARWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGGACATCGATAAGATTCAGGAGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGAGGACATTTCTCAACCTAACAATTTAGTCGAACC
TCATGATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAGCCAACAGAGGGTTTCTCCCTGCATAATTCGTCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAG
CTCCTACAATATGTCAGGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGTCATTCACTCAAATATTTTTAAAGGTAAAGAAAGAGAAAATGTTACCAATGGAAAT
GCTGAAGAAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAATAGAACAGTTGCCGGTGCCTTTAATTAATAAAGAGTCGCGTCCTGAAACGAATATAAGCTC
TACTAAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGCGCAAGTGGAGGCACCAACAAGGATCTGCGGTATACAATCCATCTACAGTACGCGTAAACTCATTGGCTC
TGCAGAATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTA
TTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGACATTACAACCACCTTATCCAAAGTGGTACGACCCGTATGTTCGTTGTGATTACCATGCAGGAGTTGTAGGTCA
TTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAAGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTGGAATCATG
AGTGTACAAGATTATTAAAATCAATGTTGACCTATTGCTTCGCATTATCAATAAAGTTTATTTCTTCTTTGAAGTCATCTTTCAGATTGCTTGCTAGTGTTAAAATGGCA
ATGAAGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGGACATCGATAAGATTCAGGAGCAAGTCACAGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGAGGACATTTCTCAACCTAACAATTTAGTCGAACC
TCATGATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAGCCAACAGAGGGTTTCTCCCTGCATAATTCGTCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAG
CTCCTACAATATGTCAGGTTGAATTTACACTCCAAGATGGACAAACATCAAAGGTCATTCACTCAAATATTTTTAAAGGTAAAGAAAGAGAAAATGTTACCAATGGAAAT
GCTGAAGAAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAATAGAACAGTTGCCGGTGCCTTTAATTAATAAAGAGTCGCGTCCTGAAACGAATATAAGCTC
TACTAAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGCGCAAGTGGAGGCACCAACAAGGATCTGCGGTATACAATCCATCTACAGTACGCGTAAACTCATTGGCTC
TGCAGAATGATCCACAAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTA
TTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGACATTACAACCACCTTATCCAAAGTGGTACGACCCGTATGTTCGTTGTGATTACCATGCAGGAGTTGTAGGTCA
TTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTGCTAATGAGGGCAAGATGGCTAAAGTTTTCAAAGGAAGATGGTCAATACATGAAGCACTGGAATCATG
AGTGTACAAGATTATTAAAATCAATGTTGACCTATTGCTTCGCATTATCAATAAAGTTTATTTCTTCTTTGAAGTCATCTTTCAGATTGCTTGCTAGTGTTAAAATGGCA
ATGAAGCTTTAG
Protein sequenceShow/hide protein sequence
MRQDIDKIQEQVTEIFNVLKNIVTVEDISQPNNLVEPHDNSSPRVDPPLCQPTEGFSLHNSSHEAQLSKKGQQAPTICQVEFTLQDGQTSKVIHSNIFKGKERENVTNGN
AEETAGKEYAQRWGEAIEQLPVPLINKESRPETNISSTKRKNKVQAVISKRKWRHQQGSAVYNPSTVRVNSLALQNDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQL
FQGNLLAPVPVETLQPPYPKWYDPYVRCDYHAGVVGHSTENCTSLKHKVQVLMRARWLKFSKEDGQYMKHWNHECTRLLKSMLTYCFALSIKFISSLKSSFRLLASVKMA
MKL