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Moc06g30350 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g30350
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr6:22822826..22823257
RNA-Seq ExpressionMoc06g30350
SyntenyMoc06g30350
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]6.9e-4069.72Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVNFSTITPKKPNSAL                           
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------

Query:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
           +LVRGG VKDLPGVRYHIVRGTL A+GVKDRQQGRSSAL
Subjt:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]1.5e-4272.54Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVNFSTITPKKPNSAL                           
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------

Query:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
           +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]1.2e-4978.32Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL                          
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------

Query:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.9e-4675.52Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------
        MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPK  NSAL                          
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------

Query:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.4e-4574.83Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+NFSTITPKKPNSAL                          
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------

Query:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
            +LVRG RVKDLP VRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic7.2e-4372.54Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVNFSTITPKKPNSAL                           
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------

Query:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
           +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A443Q5G0 30S ribosomal protein S12, chloroplastic1.1e-3869.78Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRV-------------------
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVNFSTITPKKPNSAL  V   R+                   
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRV-------------------

Query:  --------KDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
                +DLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  --------KDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A443Q5I9 30S ribosomal protein S12, chloroplastic1.4e-3868.31Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSAL                           
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------

Query:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
           +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6A5N1Q8 Uncharacterized protein3.3e-4069.72Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVNFSTITPKKPNSAL                           
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL---------------------------

Query:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
           +LVRGG VKDLPGVRYHIVRGTL A+GVKDRQQGRSSAL
Subjt:  ---LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383946.0e-5078.32Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL                          
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSAL--------------------------

Query:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  ----LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.8e-2263.16Show/hide
Query:  SCTVLSSGSKGDLSVNFSTITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +CT + SGSKGDLSVNFSTITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  SCTVLSSGSKGDLSVNFSTITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

A4QJX7 30S ribosomal protein S12-B, chloroplastic2.1e-1555.81Show/hide
Query:  KGDLSVNFSTITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +G  +  +STITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KGDLSVNFSTITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic5.5e-1661.25Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic5.5e-1661.25Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic5.5e-1661.25Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.2e-0527.78Show/hide
Query:  LRDGMEEGRRFSNEEK----------DPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRVKDLPGVRYHIVRGTLDAVGV
        +R G EE RR                 P  S    ++P         +   ++ D+  +           + +L+RGGRVKD PGV+ H +RG  D +G+
Subjt:  LRDGMEEGRRFSNEEK----------DPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRVKDLPGVRYHIVRGTLDAVGV

Query:  KDRQQGRS
          R++GRS
Subjt:  KDRQQGRS

ATCG00065.1 ribosomal protein S12A1.3e-1559.74Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C1.3e-1559.74Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B1.3e-1559.74Show/hide
Query:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        TITPKKPNSAL                              +LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  TITPKKPNSAL------------------------------LLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein1.2e-0527.78Show/hide
Query:  LRDGMEEGRRFSNEEK----------DPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRVKDLPGVRYHIVRGTLDAVGV
        +R G EE RR                 P  S    ++P         +   ++ D+  +           + +L+RGGRVKD PGV+ H +RG  D +G+
Subjt:  LRDGMEEGRRFSNEEK----------DPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRVKDLPGVRYHIVRGTLDAVGV

Query:  KDRQQGRS
          R++GRS
Subjt:  KDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAA
TTGAATGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCA
AACTCTGCCTTACTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGT
CAACAAGGGCGTTCTAGTGCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAA
TTGAATGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCA
AACTCTGCCTTACTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGT
CAACAAGGGCGTTCTAGTGCGTTGTAG
Protein sequenceShow/hide protein sequence
MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALLLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR
QQGRSSAL