CuGenDBv2

Gene ID	Moc06g30410
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Photosystem II CP43 reaction center protein
Genome location	chr6:22856900..22858260
RNA-Seq Expression	Moc06g30410
Synteny	Moc06g30410
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009521 - photosystem (cellular component) GO:0009536 - plastid (cellular component) GO:0016168 - chlorophyll binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QWQ50105.1 photosystem II CP43 chlorophyll apoprotein [Cyclanthera pedata]

4.8e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_004841779.1 photosystem II CP43 chlorophyll apoprotein [Cucumis melo subsp. melo]

4.8e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009004040.1 photosystem II CP43 chlorophyll apoprotein [Cucumis hystrix]

4.8e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009456142.1 photosystem II 44 kDa protein [Lagenaria siceraria]

4.8e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009525182.1 photosystem II CP43 chlorophyll apoprotein [Hodgsonia macrocarpa]

4.8e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LFP8 Photosystem II CP43 reaction center protein

2.3e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A1S4EU06 Photosystem II CP43 reaction center protein

2.3e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A1X9Q1T4 Photosystem II CP43 reaction center protein

2.3e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A249RZ79 Photosystem II CP43 reaction center protein

2.3e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A6M3RWB3 Photosystem II CP43 reaction center protein

2.3e-171

68.08

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

SwissProt top hits

e value

%identity

Alignment

A1XFV1 Photosystem II CP43 reaction center protein

4.1e-173

67.23

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEV+DTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDI+GGHVWLGSICILGGIWHILTKPFAWARRA VWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGE+IFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q1KXW3 Photosystem II CP43 reaction center protein

7.0e-173

67.65

Show/hide

Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVL MTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q2QD93 Photosystem II CP43 reaction center protein

6.3e-174

68.08

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Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q332Y2 Photosystem II CP43 reaction center protein

7.0e-173

67.65

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Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVL MTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q6EW52 Photosystem II CP43 reaction center protein

4.1e-173

67.23

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Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEV+DTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDI+GGHVWLGSICILGGIWHILTKPFAWARRA VWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGE+IFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.6e-172

67.23

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Query:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
        MKTLYSLRRFY VETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
Subjt:  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG

Query:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------
        PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL                                
Subjt:  PGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILL--------------------------------

Query:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------
                           GEGWIVSVDDLEDI+GGHVWLGSICI GGIWHILTKPFAWARRALVWSGEAYLSYS                         
Subjt:  -------------------GEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYS-------------------------

Query:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
                                            LGKYLMRSPTGEVIFGGET+RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP
Subjt:  ------------------------------------LGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP

Query:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        L                                      GHLWHAGRARAAAAGFEKGIDRDFEPVL MTPLN
Subjt:  L--------------------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

ATCG00680.1 photosystem II reaction center protein B

5.0e-09

29.82

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Query:  GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATL-------GWGVGPGGEVIDTFPYFVSGV--LH
        G  W+  +  ++N  G+LL  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  L       GW +  GG + +   +   GV   H
Subjt:  GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATL-------GWGVGPGGEVIDTFPYFVSGV--LH

Query:  LISSAVLGFGGIYH
        ++ S +     I+H
Subjt:  LISSAVLGFGGIYH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGG
TGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTC
GAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTT
ATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTT
GAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGAGAAGGATGGATTGTTAGT
GTGGACGATTTGGAAGATATAGTTGGGGGGCATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGC
CGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTTATTTTTGGAGGAGAGACTATCCGT
TTTTGGGATCTGCGTGCTCCCTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGGCTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCC
GCGGAATATATGACCCATGCTCCTTTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCT
GTTCTTTTCATGACTCCTCTTAACTGA

mRNA sequence

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Protein sequence

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MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEV
IDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWAR
RALVWSGEAYLSYSLGKYLMRSPTGEVIFGGETIRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARAAAAGFEKGIDRDFEP
VLFMTPLN

Moc06g30410 (gene) of Bitter gourd (OHB3-1) v2 genome