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Moc06g30460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g30460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr6:22938569..22939230
RNA-Seq ExpressionMoc06g30460
SyntenyMoc06g30460
Gene Ontology termsNA
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3023561.1 retroelement pol poly [Olea europaea subsp. europaea]1.1e-1535.97Show/hide
Query:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPLAKQKCLSF
        N+S+ F ++  +IQ+  +  MI KGS+   L++        +      +VSA  WH RLGHL++  L+  KD L + T   +    C +CPLAKQ+ LSF
Subjt:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPLAKQKCLSF

Query:  HSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
         S+  +  +PFDLIH D+W P  +       + +T+VDD
Subjt:  HSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]1.2e-2041.55Show/hide
Query:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVC--LSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFY-SCTVCPLAKQKC
        NIS+ F +  C+IQD     MI K S +N L++       + +   +    +S DTWH RLGHL+  CL++    L  +  ++S+ + SC VCPLAKQK 
Subjt:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVC--LSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFY-SCTVCPLAKQKC

Query:  LSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        LSFHSN  + + PFDL+HAD+W P  I       + LT+VDD
Subjt:  LSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

XP_013594438.1 PREDICTED: uncharacterized protein LOC106302482 [Brassica oleracea var. oleracea]1.3e-1641.61Show/hide
Query:  FSNEACVIQDKFTSGMIV-KGSLKNDLFLFGVLPQPHIVCLSSFTVSAD--TWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPLAKQKCLSFHS
        F   +C IQ+ F+ G+ + KGSLK++L++  ++PQ  I    + ++SAD   WH RLGH + + L      LS   C      +CTVCPLAKQK LSF  
Subjt:  FSNEACVIQDKFTSGMIV-KGSLKNDLFLFGVLPQPHIVCLSSFTVSAD--TWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPLAKQKCLSFHS

Query:  NKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        N  +  +PFDL+H D+W P     I    + LTIVDD
Subjt:  NKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

XP_018466876.1 PREDICTED: uncharacterized protein LOC108838433 [Raphanus sativus]5.1e-1634.84Show/hide
Query:  NISIIFSNEAC---------VIQDKFTSGMIVKGSLKNDLFLF-------GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLF
        +IS++FS+ +C          IQ++    MI KG+L  +L+L          +   H + L    VS+DTWH RLGH +++ +      L  ++      
Subjt:  NISIIFSNEAC---------VIQDKFTSGMIVKGSLKNDLFLF-------GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLF

Query:  YSCTVCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        + C VCPLAKQK LSF S+ ++ + PFDL+H DVW P  +       +  TIVDD
Subjt:  YSCTVCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

XP_022871010.1 uncharacterized protein LOC111390234 [Olea europaea var. sylvestris]1.1e-1538.41Show/hide
Query:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF--GVLPQPH--IVCL--------SSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCT
        ++SI F  + CVIQ   T  MI KG    DL++   G     H  +V          SS  +++  WH+RLGHL++  L+  KD+L F          C 
Subjt:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF--GVLPQPH--IVCL--------SSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCT

Query:  VCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        VCPLAKQ+ LSF SN  +    FDLIH DVW P  +       + LT+VDD
Subjt:  VCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

TrEMBL top hitse value%identityAlignment
A0A438CAZ4 Retrovirus-related Pol polyprotein from transposon RE11.4e-1436.73Show/hide
Query:  DIPNISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF---GVLPQPHIVCLSSFTVS--ADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPL
        D  + S++F+ +AC+IQ+     MI KGS K  L+       +     V  S    S     WH RLGH ++S L   + +L F + S+ L   C VCPL
Subjt:  DIPNISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF---GVLPQPHIVCLSSFTVS--ADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPL

Query:  AKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        AKQ+CL + S     +  FDL+H D+W P  +  +    F LTIVDD
Subjt:  AKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 85.7e-2141.55Show/hide
Query:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVC--LSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFY-SCTVCPLAKQKC
        NIS+ F +  C+IQD     MI K S +N L++       + +   +    +S DTWH RLGHL+  CL++    L  +  ++S+ + SC VCPLAKQK 
Subjt:  NISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVC--LSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFY-SCTVCPLAKQKC

Query:  LSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        LSFHSN  + + PFDL+HAD+W P  I       + LT+VDD
Subjt:  LSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

A0A5D3C3Y6 T7N9.56.1e-1542.86Show/hide
Query:  MIVKGSLKNDLFLF-----GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYS--CTVCPLAKQKCLSFHSNKTIYARPFDL
        MI KG LK+ L++        + Q  I   SS  +S D WH RL H + + L+  KDVL F   SYSL Y   C VCPLAK++CL+ HSN  + A PFDL
Subjt:  MIVKGSLKNDLFLF-----GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYS--CTVCPLAKQKCLSFHSNKTIYARPFDL

Query:  IHADVWVPLPIRCIMDIVFSLTIVDD
        I+A++W    I       + L I+DD
Subjt:  IHADVWVPLPIRCIMDIVFSLTIVDD

A0A6J0M5G4 uncharacterized protein LOC1088384332.5e-1634.84Show/hide
Query:  NISIIFSNEAC---------VIQDKFTSGMIVKGSLKNDLFLF-------GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLF
        +IS++FS+ +C          IQ++    MI KG+L  +L+L          +   H + L    VS+DTWH RLGH +++ +      L  ++      
Subjt:  NISIIFSNEAC---------VIQDKFTSGMIVKGSLKNDLFLF-------GVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLF

Query:  YSCTVCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        + C VCPLAKQK LSF S+ ++ + PFDL+H DVW P  +       +  TIVDD
Subjt:  YSCTVCPLAKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

A5B7R0 Integrase catalytic domain-containing protein6.1e-1537.41Show/hide
Query:  DIPNISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF---GVLPQPHIVCLSSFTVS--ADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPL
        D  ++S++F+ +AC+IQ+     MI KGS K  L+       +     V  S    S     WH RLGH ++S L   + VL F + S+ L   C VCPL
Subjt:  DIPNISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLF---GVLPQPHIVCLSSFTVS--ADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPL

Query:  AKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD
        AKQ+CL + S     +  FDL+H D+W P  +  +    F LTIVDD
Subjt:  AKQKCLSFHSNKTIYARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATTCCCAACATTTCAATCATATTTTCTAATGAGGCATGTGTTATTCAGGACAAATTCACTTCGGGGATGATTGTCAAGGGTAGCTTGAAGAATGACTTGTTTCT
CTTTGGTGTATTACCACAACCACATATTGTGTGTCTCTCATCCTTTACTGTTTCTGCTGATACTTGGCATTATCGTTTAGGACATCTTGCTTACAGTTGTTTAAATGCCT
TTAAAGATGTTTTGTCTTTTGCTACATGCTCATATTCTCTTTTTTATTCATGTACAGTTTGTCCTTTAGCCAAGCAGAAATGTTTGTCTTTTCATTCTAATAAAACAATA
TATGCTAGGCCGTTTGATCTTATACATGCTGATGTTTGGGTCCCTTTACCCATCCGATGCATAATGGATATTGTTTTTTCTTTAACTATTGTGGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACATTCCCAACATTTCAATCATATTTTCTAATGAGGCATGTGTTATTCAGGACAAATTCACTTCGGGGATGATTGTCAAGGGTAGCTTGAAGAATGACTTGTTTCT
CTTTGGTGTATTACCACAACCACATATTGTGTGTCTCTCATCCTTTACTGTTTCTGCTGATACTTGGCATTATCGTTTAGGACATCTTGCTTACAGTTGTTTAAATGCCT
TTAAAGATGTTTTGTCTTTTGCTACATGCTCATATTCTCTTTTTTATTCATGTACAGTTTGTCCTTTAGCCAAGCAGAAATGTTTGTCTTTTCATTCTAATAAAACAATA
TATGCTAGGCCGTTTGATCTTATACATGCTGATGTTTGGGTCCCTTTACCCATCCGATGCATAATGGATATTGTTTTTTCTTTAACTATTGTGGATGATTGA
Protein sequenceShow/hide protein sequence
MDIPNISIIFSNEACVIQDKFTSGMIVKGSLKNDLFLFGVLPQPHIVCLSSFTVSADTWHYRLGHLAYSCLNAFKDVLSFATCSYSLFYSCTVCPLAKQKCLSFHSNKTI
YARPFDLIHADVWVPLPIRCIMDIVFSLTIVDD