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Moc06g30890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g30890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr6:23272860..23283616
RNA-Seq ExpressionMoc06g30890
SyntenyMoc06g30890
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]1.3e-0932Show/hide
Query:  LKLNIDAACG--ANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA
        LK+N D A        G G +IRDE   L+ AG ++   P + L+AELL I+ GL   +      + VES+CL A+ LL      L PE   + DI    
Subjt:  LKLNIDAACG--ANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA

Query:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHE
          +N+    HV R  N +   +AK    +     W  + P WL+ +  H+
Subjt:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHE

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.7e-0930.07Show/hide
Query:  LKLNIDAAC--GANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA
        +K+N+D AC    + TG+G V +++   ++ A  R L + Y PL  E L I EGL     L   ++ V+S+   +++L+    +      VW+ DI   A
Subjt:  LKLNIDAAC--GANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA

Query:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWL
        ++     F+H+ RSS+  T  LA   +    +  W   FP WL
Subjt:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.0e-2241.72Show/hide
Query:  AAVGLKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGT
        ++V LKLN DAAC    T  G +IRD S  LVAA S  +P P +PLLAE+  I EGL FA +  F++L VES+ L A+ L+R  + T G E  W+ +I  
Subjt:  AAVGLKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGT

Query:  LALSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISS-SWTCNFPFWLLRVNEHEISSTSVAHAA
        L        F H  R  NR+   LAK G+    ++ +W  NFP WLL + + +  S + AH A
Subjt:  LALSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISS-SWTCNFPFWLLRVNEHEISSTSVAHAA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.2e-1171.15Show/hide
Query:  LLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM
        LL++YG ASGQCINFSKSA+LFSPNVH  RQ YLQ +L V+LV   GNYLG+
Subjt:  LLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.0e-1048.28Show/hide
Query:  LSRGPGSSLVRETALCNSLHKQAISGKLHVLLFMGLLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM
        LS  P   LV      N       + +L  L    LL  YGT S QCINF+KSA++FSPNVH  RQ +L SLL V LV D GNY G+
Subjt:  LSRGPGSSLVRETALCNSLHKQAISGKLHVLLFMGLLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.7e-0932.7Show/hide
Query:  LKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLALS
        +K+N DAA     +G+G ++R+ +  +V A      +   PLLA++L IREGL  A  LG   + VE++ L A++L+       G    W+ DI   A  
Subjt:  LKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLALS

Query:  LNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHEISSTSVAHAAF
             F HV R SN     L +  +       W  +FP WL R+ E      SVA  AF
Subjt:  LNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHEISSTSVAHAAF

TrEMBL top hitse value%identityAlignment
A0A6J1DJL6 uncharacterized protein LOC1110217118.1e-1030.07Show/hide
Query:  LKLNIDAAC--GANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA
        +K+N+D AC    + TG+G V +++   ++ A  R L + Y PL  E L I EGL     L   ++ V+S+   +++L+    +      VW+ DI   A
Subjt:  LKLNIDAAC--GANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA

Query:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWL
        ++     F+H+ RSS+  T  LA   +    +  W   FP WL
Subjt:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWL

A0A6J1DX30 uncharacterized protein LOC1110248742.4e-2241.72Show/hide
Query:  AAVGLKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGT
        ++V LKLN DAAC    T  G +IRD S  LVAA S  +P P +PLLAE+  I EGL FA +  F++L VES+ L A+ L+R  + T G E  W+ +I  
Subjt:  AAVGLKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGT

Query:  LALSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISS-SWTCNFPFWLLRVNEHEISSTSVAHAA
        L        F H  R  NR+   LAK G+    ++ +W  NFP WLL + + +  S + AH A
Subjt:  LALSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISS-SWTCNFPFWLLRVNEHEISSTSVAHAA

A0A6J1DX30 uncharacterized protein LOC1110248742.5e-1171.15Show/hide
Query:  LLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM
        LL++YG ASGQCINFSKSA+LFSPNVH  RQ YLQ +L V+LV   GNYLG+
Subjt:  LLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM

A0A6J1DX30 uncharacterized protein LOC1110248749.5e-1148.28Show/hide
Query:  LSRGPGSSLVRETALCNSLHKQAISGKLHVLLFMGLLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM
        LS  P   LV      N       + +L  L    LL  YGT S QCINF+KSA++FSPNVH  RQ +L SLL V LV D GNY G+
Subjt:  LSRGPGSSLVRETALCNSLHKQAISGKLHVLLFMGLLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLGVELVQDLGNYLGM

A0A6J1DZK3 uncharacterized protein LOC1110249688.1e-1032.7Show/hide
Query:  LKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLALS
        +K+N DAA     +G+G ++R+ +  +V A      +   PLLA++L IREGL  A  LG   + VE++ L A++L+       G    W+ DI   A  
Subjt:  LKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLALS

Query:  LNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHEISSTSVAHAAF
             F HV R SN     L +  +       W  +FP WL R+ E      SVA  AF
Subjt:  LNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHEISSTSVAHAAF

J7G0Q7 Non-ltr retroelement reverse transcriptase6.2e-1032Show/hide
Query:  LKLNIDAACG--ANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA
        LK+N D A        G G +IRDE   L+ AG ++   P + L+AELL I+ GL   +      + VES+CL A+ LL      L PE   + DI    
Subjt:  LKLNIDAACG--ANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLA

Query:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHE
          +N+    HV R  N +   +AK    +     W  + P WL+ +  H+
Subjt:  LSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGTTGTCCTGCCATTAGACGTTCCATACCTATTAGTTAGCAGATCCTCCGTCGTCAGTATTTTCACTCTCAAGTCGAAGCTAAGGTTCACTCTTGAGTTCAGGTT
AAGCCGGGGACCAGGTTCGAGCTTGGTTCGTGAAACAGCGTTGTGCAATTCTTTGCATAAACAAGCAATTTCCGGCAAATTGCATGTATTGCTTTTCATGGGGTTATTGG
AAGCTTATGGAACTGCCTCCGGCCAATGTATCAATTTCTCTAAATCTGCTGTCTTGTTCTCCCCAAATGTCCATGCTGCTAGGCAAGCCTATCTTCAATCACTTTTGGGA
GTTGAGTTGGTACAGGATCTAGGGAACTATCTCGGGATGATTTTGATCTTATTCTACAGATCCCCCTCAACTGTTATCACTTTGAGGATTATTGGCTATGAAATTATGAT
AAGAGAGCACTCAACCATTGAGCTCCGCTGTGCCTTTTCCTGGCCAATGGGAGAGATGGACGCAGCTGTTGGTTTGAAATTGAACATTGATGCTGCATGTGGAGCGAATT
TGACGGGATTGGGGTTTGTTATTAGGGATGAATCCGATCATTTAGTGGCAGCAGGGAGTCGGTCGCTTCCTCTTCCGTACGCCCCTTTACTTGCTGAGCTCTTAGACATC
CGGGAAGGTCTCCTCTTTGCAATTTCACTGGGTTTTTCGTATCTTACAGTCGAGTCCAATTGTCTCACCGCAGTATCCCTTCTTCGTGGCGGTTTGGAAACCCTCGGACC
TGAATGGGTTTGGATTCACGACATCGGTACTCTTGCTCTTTCTTTGAACCTCTATGATTTCGTTCATGTTCACCGGAGTAGCAATCGTTCAACGGATTTTCTGGCAAAAC
GTGGTCTCCTTGATGAAATCTCCTCTTCGTGGACCTGCAATTTTCCGTTTTGGCTTTTGCGTGTTAATGAACACGAAATTTCCTCCACTTCTGTAGCCCATGCGGCATTT
GTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACGTTGTCCTGCCATTAGACGTTCCATACCTATTAGTTAGCAGATCCTCCGTCGTCAGTATTTTCACTCTCAAGTCGAAGCTAAGGTTCACTCTTGAGTTCAGGTT
AAGCCGGGGACCAGGTTCGAGCTTGGTTCGTGAAACAGCGTTGTGCAATTCTTTGCATAAACAAGCAATTTCCGGCAAATTGCATGTATTGCTTTTCATGGGGTTATTGG
AAGCTTATGGAACTGCCTCCGGCCAATGTATCAATTTCTCTAAATCTGCTGTCTTGTTCTCCCCAAATGTCCATGCTGCTAGGCAAGCCTATCTTCAATCACTTTTGGGA
GTTGAGTTGGTACAGGATCTAGGGAACTATCTCGGGATGATTTTGATCTTATTCTACAGATCCCCCTCAACTGTTATCACTTTGAGGATTATTGGCTATGAAATTATGAT
AAGAGAGCACTCAACCATTGAGCTCCGCTGTGCCTTTTCCTGGCCAATGGGAGAGATGGACGCAGCTGTTGGTTTGAAATTGAACATTGATGCTGCATGTGGAGCGAATT
TGACGGGATTGGGGTTTGTTATTAGGGATGAATCCGATCATTTAGTGGCAGCAGGGAGTCGGTCGCTTCCTCTTCCGTACGCCCCTTTACTTGCTGAGCTCTTAGACATC
CGGGAAGGTCTCCTCTTTGCAATTTCACTGGGTTTTTCGTATCTTACAGTCGAGTCCAATTGTCTCACCGCAGTATCCCTTCTTCGTGGCGGTTTGGAAACCCTCGGACC
TGAATGGGTTTGGATTCACGACATCGGTACTCTTGCTCTTTCTTTGAACCTCTATGATTTCGTTCATGTTCACCGGAGTAGCAATCGTTCAACGGATTTTCTGGCAAAAC
GTGGTCTCCTTGATGAAATCTCCTCTTCGTGGACCTGCAATTTTCCGTTTTGGCTTTTGCGTGTTAATGAACACGAAATTTCCTCCACTTCTGTAGCCCATGCGGCATTT
GTTGTTTAA
Protein sequenceShow/hide protein sequence
MYVVLPLDVPYLLVSRSSVVSIFTLKSKLRFTLEFRLSRGPGSSLVRETALCNSLHKQAISGKLHVLLFMGLLEAYGTASGQCINFSKSAVLFSPNVHAARQAYLQSLLG
VELVQDLGNYLGMILILFYRSPSTVITLRIIGYEIMIREHSTIELRCAFSWPMGEMDAAVGLKLNIDAACGANLTGLGFVIRDESDHLVAAGSRSLPLPYAPLLAELLDI
REGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLGPEWVWIHDIGTLALSLNLYDFVHVHRSSNRSTDFLAKRGLLDEISSSWTCNFPFWLLRVNEHEISSTSVAHAAF
VV