CuGenDBv2

Gene ID	Moc06g31230
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr6:23499181..23507573
RNA-Seq Expression	Moc06g31230
Synteny	Moc06g31230
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

5.5e-64

72.34

Show/hide

Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

7.2e-64

72.43

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELKCY
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSW+QL+ GEMT++VGTG VVSA+AVG L+ Y
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELKCY

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

9.4e-64

72.34

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

5.5e-64

72.34

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

TYK26319.1 gag/pol protein [Cucumis melo var. makuwa]

5.5e-64

72.34

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

4.5e-64

72.34

Show/hide

Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

A0A5A7TU93 Gag/pol protein

3.5e-64

72.43

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELKCY
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSW+QL+ GEMT++VGTG VVSA+AVG L+ Y
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELKCY

A0A5D3CPJ6 Gag/pol protein

2.7e-64

72.34

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

A0A5D3CSZ6 Gag/pol protein

2.7e-64

72.34

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Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

A0A5D3DS88 Gag/pol protein

2.7e-64

72.34

Show/hide

Query:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW
        MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGT+ +PSSSG+K +KKKK  G+G+K + AA A+  K   A KG CFH N +GHW
Subjt:  MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHW

Query:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK
        KRNCPKYLAEKKKA + KYDLLVLETCLVENDDSAWI+DSGATNHVC SFQGISSWRQL+ GEMT++VGTG VVSA+AVG L+ C  K
Subjt:  KRNCPKYLAEKKKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELK-CYHK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATAAGCTGGAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGACCTACCAATCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAA
GAGGTTCAATAGAGGATCGTCCTCTGGAACCAGGTATGTGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAAGGGTCTAAACCTGACTCAG
CTGCTGTTGCCCAGAAAGGTAAGGTCAATGTTGCAGAGAAAGGAAAGTGTTTCCACCGCAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAG
AAGAAAGCCAACGAAGTTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGGATTCAGGAGCCACTAATCACGTTTGTTT
TTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAAGTCGGAACGGGAGAGGTTGTCTCAGCTGTGGCGGTAGGGGAGCTCAAGTGCT
ACCACAAGCACGATCTCGAGACTCAAGAGGATAGCGAGAAAGATCCGGTGGTGGTGTTCGAGGGGAACTTACTGAAGAAACGTTCTTCAAAGAAAACAGCGAAGAAGACG
AAGCAGACTGCGCAGACAGCGCCATGGCGCTATGCAGCAGCGCCATGGCGTTGCGGGATAGCACATAGCGCCACGACGCTGCACTGTAGCGCCGGGCGCCGCGGCGCTGC
CCTTAGGTGCCGAGGCGCTGTCCCGGGTGTTTTCGACGCGGTTCCGAAGCTCCGGTTAGCGGTCTTTGGATCTTCGATGTCGTCATCAGGTATCACAACTTGGGTTTACA
ACCCACATAGCGGTCAGTGGAAACATTTTTCCTTGTCTGCAACTTTGGCCTTGCCTTTCTTGGCAGCAGTAGTAGTAGAGTCAAGTTTGGGCCCTTTACCAGCAGCCTTT
ATGTTCTCGAAAGTCTTACTTCCAGAAAAAGAGGGCTCAAACTTAGTTCAAGAGGAAACTCTTCGAAAGAGATTCCAAAATGAAGCTGACCTGACTTTTCTCGTCTATGA
CGGTCCCGTTCGTCTGTGCCACATTGAAGTGGATCATCAGCGAGTCCATGATCTCCTTGGCGGTGACCATGTTCTCGTGGTTCTTAACAAGCACATCAGATATGTTCGCC
AATATGTAGACCTTTGTCTTGTCGTTGGCCTCGATCCATCGGTCATAGGCGTTGTGCATCACTGTAGTGGCGTTAGGCGCATGAGCTTGAGGATAATCCTCTTGCAAGAT
GAACCTAAGATCATGTATCACGAGTATAGTGTTTAG

mRNA sequence

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Protein sequence

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MNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATSKRFNRGSSSGTRYVPSSSGSKTFKKKKAAGKGSKPDSAAVAQKGKVNVAEKGKCFHRNMDGHWKRNCPKYLAEK
KKANEVKYDLLVLETCLVENDDSAWILDSGATNHVCFSFQGISSWRQLDAGEMTLKVGTGEVVSAVAVGELKCYHKHDLETQEDSEKDPVVVFEGNLLKKRSSKKTAKKT
KQTAQTAPWRYAAAPWRCGIAHSATTLHCSAGRRGAALRCRGAVPGVFDAVPKLRLAVFGSSMSSSGITTWVYNPHSGQWKHFSLSATLALPFLAAVVVESSLGPLPAAF
MFSKVLLPEKEGSNLVQEETLRKRFQNEADLTFLVYDGPVRLCHIEVDHQRVHDLLGGDHVLVVLNKHIRYVRQYVDLCLVVGLDPSVIGVVHHCSGVRRMSLRIILLQD
EPKIMYHEYSV

Moc06g31230 (gene) of Bitter gourd (OHB3-1) v2 genome