CuGenDBv2

Gene ID	Moc06g32380
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase domain-containing protein
Genome location	chr6:24378855..24379565
RNA-Seq Expression	Moc06g32380
Synteny	Moc06g32380
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW20303.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

1.9e-31

33.83

Show/hide

Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W   S G FT KS F+AL+  S   +    +++WN +VP K+K F+W + ++  NT + +Q + P+  LSP +C LC+   ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ + D +A  F G        +LWQ A  A+LW +W+E N+R+FEDKS   ++        AS W +   K F    L +I  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

RVW53010.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

4.2e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

RVW79087.1 putative ribonuclease H protein [Vitis vinifera]

4.2e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

RVW92607.1 putative ribonuclease H protein [Vitis vinifera]

4.2e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

RVX23716.1 putative ribonuclease H protein [Vitis vinifera]

4.2e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

TrEMBL top hits

e value

%identity

Alignment

A0A438CAL5 Transposon TX1 uncharacterized 149 kDa protein

9.1e-32

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W   S G FT KS F+AL+  S   +    +++WN +VP K+K F+W + ++  NT + +Q + P+  LSP +C LC+   ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ + D +A  F G        +LWQ A  A+LW +W+E N+R+FEDKS   ++        AS W +   K F    L +I  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

A0A438EAW3 Putative ribonuclease H protein

2.0e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

A0A438EZ36 LINE-1 retrotransposable element ORF2 protein

2.0e-31

33.83

Show/hide

Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

A0A438I7G2 Putative ribonuclease H protein

2.0e-31

33.83

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Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

A0A438KR90 Putative ribonuclease H protein

2.0e-31

33.83

Show/hide

Query:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR
        D+  W     G FT KS F+AL+  S          +WN +VP KVK F+W + ++  NT + +Q + PH  LSP++C LC+++ ++VDH+F+HC     
Subjt:  DRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTR

Query:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD
         W+ +  L    +  P+ I D     F G        +LWQ A  AL+W +W+E N+R+FEDK+        + +  AS WA    K F    L ++  D
Subjt:  AWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQD

Query:  W
        W
Subjt:  W

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.7e-09

24.1

Show/hide

Query:  RDRLWWKADSKGCFTAKSAFIALT---APSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCF
        RDRL WK    G F+ +SA+  LT    P P +  +  + +W  RVP++VK FLW +  ++  T E   R+    + + +VC +C    +S+ H+   C 
Subjt:  RDRLWWKADSKGCFTAKSAFIALT---APSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCF

Query:  FVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGN
             W  +           K + +++ +  G     G   I W      ++W  WK     +F + +   D      K    W   +++   GN
Subjt:  FVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGN

Arabidopsis top hits

e value

%identity

Alignment

AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.6e-04

22.16

Show/hide

Query:  WKADSKGC--FTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHW-MLSPSVCGLCLRNSDSVDHIFIHCFFVTRA
        W  + K C  F++   + AL   S  +  + A  +W      K  F +W        T    + +L  W M   + CGLC  + +  DH+F+ C F    
Subjt:  WKADSKGC--FTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHW-MLSPSVCGLCLRNSDSVDHIFIHCFFVTRA

Query:  WNYMASLLD---FSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSV
        W+ ++  L+   FSF +   + D+  +       +     L +   +++L+ +WK+ N+ L   +++
Subjt:  WNYMASLLD---FSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSV

AT1G45063.1 copper ion binding;electron carriers

4.2e-05

27.17

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Query:  PSVCGLCLRNSDSVDHIFIHCFFVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVP
        PS+C LC    ++  H+F  C F    W++  S    +   P  +    A          + A + + A +A ++H+W+E N RL  +KS P
Subjt:  PSVCGLCLRNSDSVDHIFIHCFFVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVP

AT3G25270.1 Ribonuclease H-like superfamily protein

1.8e-08

23.72

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Query:  IWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEA
        IW  +   K+K FLW L   +  TG+ ++R+  H    P  C  C +  ++  H+F  CF+  + W   AS +                   G+T++ + 
Subjt:  IWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTRAWNYMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEA

Query:  AILW-QCAARA----------LLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWW
         +L   C A            +LW LWK  N  +F+ KS+   +     ++    W
Subjt:  AILW-QCAARA----------LLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWW

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTCCGGGCCAAGGCAGGGATCGTTTATGGTGGAAGGCTGATAGTAAAGGTTGTTTTACAGCGAAATCAGCTTTTATAGCTTTGACGGCTCCCTCCCCTAAATTGAA
CACGACCACAGCTTCTATGATATGGAATTTTAGGGTTCCAAAAAAGGTGAAATTTTTCCTATGGACTCTCTTTTATAGGAGCACAAACACAGGCGAGAGAATACAAAGAA
AGCTCCCCCATTGGATGCTCTCCCCTTCGGTTTGTGGTCTCTGCCTAAGAAATTCAGATTCGGTGGATCATATTTTCATCCACTGTTTTTTTGTCACTCGAGCTTGGAAC
TATATGGCTTCGCTTTTGGATTTCTCCTTCTGTCTTCCTAAACATATAGATGACTTCGTAGCGGAAGGATTTGGTGGGGTGACGCTCAAAGGCGAAGCTGCGATCCTATG
GCAATGTGCAGCGAGGGCTCTCCTTTGGCATCTTTGGAAAGAGACAAATAGTAGACTTTTTGAGGACAAATCTGTCCCTTTAGATTCTTTTTGTGTGAATACAAAACATA
CAGCTTCTTGGTGGGCCACAATCCACAAGAAGGCTTTTGGAAACTACAGTCTTTTTCTGATTTCACAGGATTGGAAAGAATGCGATTGTATAGTTCTCTTTGGGGAGGGT
TCTCTCTACCCTCCGCCATTAGGTTGTTCTCGCCATTTTGGGCTCTTTTGA

mRNA sequence

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Protein sequence

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MVPGQGRDRLWWKADSKGCFTAKSAFIALTAPSPKLNTTTASMIWNFRVPKKVKFFLWTLFYRSTNTGERIQRKLPHWMLSPSVCGLCLRNSDSVDHIFIHCFFVTRAWN
YMASLLDFSFCLPKHIDDFVAEGFGGVTLKGEAAILWQCAARALLWHLWKETNSRLFEDKSVPLDSFCVNTKHTASWWATIHKKAFGNYSLFLISQDWKECDCIVLFGEG
SLYPPPLGCSRHFGLF

Moc06g32380 (gene) of Bitter gourd (OHB3-1) v2 genome