; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g34780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g34780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:26401778..26404861
RNA-Seq ExpressionMoc06g34780
SyntenyMoc06g34780
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR45251.1 hypothetical protein CICLE_v10003098mg [Citrus clementina]6.1e-4055.17Show/hide
Query:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH
        F S VK +++KF+GRINFGLWQ+QVKDVLIQSGLHKALKG+PS  +             N GS + +      KELWEKLE LY+ K ISNRLY+ E+FH
Subjt:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH

Query:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE
        TLRM EGTKI D+LS LN I+ EL+AI VKI + DKALRL+  LP SY+H+ P L++   ++ LEE     + E
Subjt:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE

KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]1.7e-3749.76Show/hide
Query:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------------SM
        K +++KF+GRINFG+WQ+QVKDVLIQSGLHKALK RP+   SEK + D    E    SS+DS+KS                                 S 
Subjt:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------------SM

Query:  NKELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIF--------DTGSLQL
         KELWEKLE LYQ K ISNRLY+ EQFH L+M EGT I D+LS LN I+ EL++I VKIN++DKALRLI  LP SY+HM+PILI+        +  S  +
Subjt:  NKELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIF--------DTGSLQL

Query:  EEEEKLR
         EE++L+
Subjt:  EEEEKLR

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.3e-3751.3Show/hide
Query:  SLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRP-------SEGASEKLSSDGGPMEYNGGSS----------RDSKKSSMNKELWEKLEALYQ
        S ++ DV+K++GRINFGLWQ+QVKDVLIQSGLHKAL+G+P       S G S+    +   ++    S+           +    S  K+LWEKLE LYQ
Subjt:  SLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRP-------SEGASEKLSSDGGPMEYNGGSS----------RDSKKSSMNKELWEKLEALYQ

Query:  AKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEE-EEKLRIKESLL
         KGI NRLY+ EQFHTLRM+  TKI D+LS LN+I+ EL+AI VK+ ++DKALRLIL L  SYEHMKPIL++   +L+  +  EKL  +E  L
Subjt:  AKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEE-EEKLRIKESLL

KAF7802225.1 cytochrome p450 [Senna tora]6.7e-3959.77Show/hide
Query:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLS---SDGGPMEYNGGSSRDSKKS------------SMNKELWEKLEA
        MS F S VK DV+KF+GRINFGLWQ+QVKDVLIQSGLHKAL+G+ S   SEK     SDG   E +  ++   + S            S  KELW+KLE 
Subjt:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLS---SDGGPMEYNGGSSRDSKKS------------SMNKELWEKLEA

Query:  LYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILI
        LYQAKGISN L + EQFHTL M+EGTKI D+LS LNSI+ EL+AI VKI+++DK LRLI  LP SYE+MK ILI
Subjt:  LYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILI

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.3e-6162.5Show/hide
Query:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMN------------------------
        MSFFMS VKIDV+KF+G INFGLWQ+QVKDVLIQS LHKALKGRPSEGASEKLS DGGPME +GGSSR SKKSSM+                        
Subjt:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMN------------------------

Query:  ---------KELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQL
                 KELWEKLEALYQAKGISNRLY+ EQFHTL+MEEG KI D+LSNLNSIIFEL+AIEVKI+++DKALRLIL LP SYEHMKPIL++   +L  
Subjt:  ---------KELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQL

Query:  EEEEKLRIKESLLMGMRTVWTHEE
         E     + E   +      +HE+
Subjt:  EEEEKLRIKESLLMGMRTVWTHEE

TrEMBL top hitse value%identityAlignment
A0A2H5QXN2 Uncharacterized protein3.0e-4055.17Show/hide
Query:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH
        F S VK +++KF+GRINFGLWQ+QVKDVLIQSGLHKALKG+PS  +             N GS + +      KELWEKLE LY+ K ISNRLY+ E+FH
Subjt:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH

Query:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE
        TLRM EGTKI D+LS LN I+ EL+AI VKI + DKALRL+  LP SY+H+ P L++   ++ LEE     + E
Subjt:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE

A0A6A3BK59 CCHC-type domain-containing protein1.3e-3545.92Show/hide
Query:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------SMNKELWE
        + D++KF+GRINFGLWQ+QVKD+LIQSGL+KALKG+P+  +  K          + G S+ S++                            S  KELWE
Subjt:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------SMNKELWE

Query:  KLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE
        KLE +YQAK +SNRLY+ E+FH L+MEEGTKI D+LS LN I+ EL++I V+I+++DKALRLI  LP SYEHM+ +L++   ++   E     I E
Subjt:  KLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE

A0A6A3CWI3 CCHC-type domain-containing protein2.2e-3545.92Show/hide
Query:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------SMNKELWE
        + D++KF+GRINFGLWQ+QVKD+LIQSGL+KALKG+P+  +  K          + G S+ S++                            S  KELWE
Subjt:  KIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKS---------------------------SMNKELWE

Query:  KLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE
        KLE +YQAK +SNRLY+ E+FH L+MEEGTKI D+LS LN I+ EL++I V I+++DKALRLI  LP SYEHM+ +L++   ++   E     I E
Subjt:  KLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE

A0A6J1CG82 uncharacterized protein LOC1110105216.1e-6262.5Show/hide
Query:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMN------------------------
        MSFFMS VKIDV+KF+G INFGLWQ+QVKDVLIQS LHKALKGRPSEGASEKLS DGGPME +GGSSR SKKSSM+                        
Subjt:  MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMN------------------------

Query:  ---------KELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQL
                 KELWEKLEALYQAKGISNRLY+ EQFHTL+MEEG KI D+LSNLNSIIFEL+AIEVKI+++DKALRLIL LP SYEHMKPIL++   +L  
Subjt:  ---------KELWEKLEALYQAKGISNRLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQL

Query:  EEEEKLRIKESLLMGMRTVWTHEE
         E     + E   +      +HE+
Subjt:  EEEEKLRIKESLLMGMRTVWTHEE

V4T6T3 Uncharacterized protein3.0e-4055.17Show/hide
Query:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH
        F S VK +++KF+GRINFGLWQ+QVKDVLIQSGLHKALKG+PS  +             N GS + +      KELWEKLE LY+ K ISNRLY+ E+FH
Subjt:  FMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFH

Query:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE
        TLRM EGTKI D+LS LN I+ EL+AI VKI + DKALRL+  LP SY+H+ P L++   ++ LEE     + E
Subjt:  TLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKE

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.9e-0423.38Show/hide
Query:  MSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKG-RPSE----GASEKLSSDGGPMEYNGGSSRDSKKSSMN-KELWEKLEALYQAKGISNRLYV
        M   K ++K F+G   + +W+ +++ +L +  + K + G  P+E        +  +    +EY   S  +   S +  +++ E L+A+Y+ K ++++L +
Subjt:  MSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKG-RPSE----GASEKLSSDGGPMEYNGGSSRDSKKSSMN-KELWEKLEALYQAKGISNRLYV

Query:  NEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYE
         ++  +L++     +L +    + +I EL A   KI E DK   L++ LP  Y+
Subjt:  NEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-1933.33Show/hide
Query:  MSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGS------SRDSKKSSMNKE----LWEKLEALYQAKGISN
        MS VK +V KFNG   F  WQ +++D+LIQ GLHK L     +  + K + D   ++    S      S D   + ++++    +W +LE+LY +K ++N
Subjt:  MSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGS------SRDSKKSSMNKE----LWEKLEALYQAKGISN

Query:  RLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEE-------EEKLRIK
        +LY+ +Q + L M EGT  L +L+  N +I +L  + VKI E+DKA+ L+  LP SY+++   ++    +++L++        EK+R K
Subjt:  RLYVNEQFHTLRMEEGTKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEE-------EEKLRIK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCTTTATGAGTCTAGTGAAGATTGACGTGAAGAAATTTAACGGAAGGATCAACTTTGGCTTGTGGCAACTGCAAGTCAAGGATGTGTTGATACAATCTGGGTT
ACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCCGAAAAGCTAAGCAGTGATGGAGGTCCAATGGAGTACAACGGTGGTTCCAGTAGAGATTCTAAGAAGTCTA
GCATGAACAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACGTGAATGAGCAGTTTCACACGCTGCGAATGGAGGAAGGT
ACGAAAATTTTAGATTATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGATGCGATCGAAGTGAAGATAAATGAAAAAGATAAAGCACTCAGGCTCATCTTATTACT
TCCACCTTCTTATGAACACATGAAGCCGATCTTGATATTCGACACTGGTAGCTTGCAATTGGAAGAAGAAGAAAAACTTCGTATAAAAGAAAGCTTGTTGATGGGGATGC
GGACAGTCTGGACACATGAAGAAAGATCAGAGCCGATTCGTCAAAGAGCTCTAGGTCGGATGCTGACAGTGTTTCTCTCATCAGGGGAGTCGATGATCATTTCCTTTGAA
GAATTCATCCTCATGGTATGTCCGTTTAACCATGATAGAGGATGTGATGTTAGCGGTTCCACAAGTTTACACATGGACATTGGCTTGGCGGTTATGCAAGGTGTGTGTGG
TGGAAGTTATGTCGATGACAGAAGAACTTCCAGGAAAGGCTATCGATGGAGAATTGGTTCGGGTATTGATGTGAATATAGCGGATGAACCTTGGCTCCCAAAATTAGGAA
ATTTTAAGCCTAATTATGTGCACAACTCTTTGTCTAATTCGAATGTTGCTTCACTAATAAGGGAGCCAGGAGTGTGGAATGAAGAGATCATCAGGAATTGCTTTCAGGAA
GATGAAGTTGATTTAATCATGAATATCCCCCTTAGCAGGAACGACCCTAATGACGAGATAATATGGGGATTTGACAAGAAAGAGTTTTTTAAAGTGAAAAGTGCTTACAG
ATTGGGGATCAACGCCTATGAATCTGATTCAGCTTCTTCATCACATACCGACTTGATAACTTTGGAAGCCCTAGCAATCTTGGAAAGTCTCAAAGCATTGAATCAATCCC
TTACCCTAGAAGCTGAAATCAAAATTGAGTTGGAATCAGATTGTCTGGAAGTAGTGAACATCATTAATAAATCGTCCATGGAGCTCACCGAAGTTTCTCTAATTGTTGAA
GACGTATGGAAAGAGGTGGAATCCTTGCCAATTGAAGGATTCAAGCATCTGTCGAGGAAGGCTAATAGAGTCGCTCATGGGATAGCAAGGAGAGCATGCGAAGAGGGATT
CTCGTCTTCGTGGAACCAGTTTTGCGCTACGTGGCTGTCTGTTTTGTTGGCCGCTGATTGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCTTTATGAGTCTAGTGAAGATTGACGTGAAGAAATTTAACGGAAGGATCAACTTTGGCTTGTGGCAACTGCAAGTCAAGGATGTGTTGATACAATCTGGGTT
ACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCCGAAAAGCTAAGCAGTGATGGAGGTCCAATGGAGTACAACGGTGGTTCCAGTAGAGATTCTAAGAAGTCTA
GCATGAACAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACGTGAATGAGCAGTTTCACACGCTGCGAATGGAGGAAGGT
ACGAAAATTTTAGATTATCTGAGTAATCTCAATAGCATCATCTTTGAGCTGGATGCGATCGAAGTGAAGATAAATGAAAAAGATAAAGCACTCAGGCTCATCTTATTACT
TCCACCTTCTTATGAACACATGAAGCCGATCTTGATATTCGACACTGGTAGCTTGCAATTGGAAGAAGAAGAAAAACTTCGTATAAAAGAAAGCTTGTTGATGGGGATGC
GGACAGTCTGGACACATGAAGAAAGATCAGAGCCGATTCGTCAAAGAGCTCTAGGTCGGATGCTGACAGTGTTTCTCTCATCAGGGGAGTCGATGATCATTTCCTTTGAA
GAATTCATCCTCATGGTATGTCCGTTTAACCATGATAGAGGATGTGATGTTAGCGGTTCCACAAGTTTACACATGGACATTGGCTTGGCGGTTATGCAAGGTGTGTGTGG
TGGAAGTTATGTCGATGACAGAAGAACTTCCAGGAAAGGCTATCGATGGAGAATTGGTTCGGGTATTGATGTGAATATAGCGGATGAACCTTGGCTCCCAAAATTAGGAA
ATTTTAAGCCTAATTATGTGCACAACTCTTTGTCTAATTCGAATGTTGCTTCACTAATAAGGGAGCCAGGAGTGTGGAATGAAGAGATCATCAGGAATTGCTTTCAGGAA
GATGAAGTTGATTTAATCATGAATATCCCCCTTAGCAGGAACGACCCTAATGACGAGATAATATGGGGATTTGACAAGAAAGAGTTTTTTAAAGTGAAAAGTGCTTACAG
ATTGGGGATCAACGCCTATGAATCTGATTCAGCTTCTTCATCACATACCGACTTGATAACTTTGGAAGCCCTAGCAATCTTGGAAAGTCTCAAAGCATTGAATCAATCCC
TTACCCTAGAAGCTGAAATCAAAATTGAGTTGGAATCAGATTGTCTGGAAGTAGTGAACATCATTAATAAATCGTCCATGGAGCTCACCGAAGTTTCTCTAATTGTTGAA
GACGTATGGAAAGAGGTGGAATCCTTGCCAATTGAAGGATTCAAGCATCTGTCGAGGAAGGCTAATAGAGTCGCTCATGGGATAGCAAGGAGAGCATGCGAAGAGGGATT
CTCGTCTTCGTGGAACCAGTTTTGCGCTACGTGGCTGTCTGTTTTGTTGGCCGCTGATTGTGTTTAA
Protein sequenceShow/hide protein sequence
MSFFMSLVKIDVKKFNGRINFGLWQLQVKDVLIQSGLHKALKGRPSEGASEKLSSDGGPMEYNGGSSRDSKKSSMNKELWEKLEALYQAKGISNRLYVNEQFHTLRMEEG
TKILDYLSNLNSIIFELDAIEVKINEKDKALRLILLLPPSYEHMKPILIFDTGSLQLEEEEKLRIKESLLMGMRTVWTHEERSEPIRQRALGRMLTVFLSSGESMIISFE
EFILMVCPFNHDRGCDVSGSTSLHMDIGLAVMQGVCGGSYVDDRRTSRKGYRWRIGSGIDVNIADEPWLPKLGNFKPNYVHNSLSNSNVASLIREPGVWNEEIIRNCFQE
DEVDLIMNIPLSRNDPNDEIIWGFDKKEFFKVKSAYRLGINAYESDSASSSHTDLITLEALAILESLKALNQSLTLEAEIKIELESDCLEVVNIINKSSMELTEVSLIVE
DVWKEVESLPIEGFKHLSRKANRVAHGIARRACEEGFSSSWNQFCATWLSVLLAADCV