CuGenDBv2

Gene ID	Moc06g35860
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr6:27556964..27558554
RNA-Seq Expression	Moc06g35860
Synteny	Moc06g35860
Gene Ontology terms	GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KYP54506.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]

4.3e-15

34.24

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ NV   +  E TT  L+K L D                        G LV +HIN+   IL   E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKG-NGKMNYNGKQQRESR
         LL+SLP+SW    TAVS+S R+N LK + I D  LS++ RR+  + P+S+        S L  +++G   +  YN + + +SR
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKG-NGKMNYNGKQQRESR

RZB51390.1 Nucleolar pre-ribosomal-associated protein 1 isoform B [Glycine soja]

3.9e-16

36.56

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ NV   +  E TT  L+KAL D                           V  HINE   IL + E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW    TAVS+S REN+LK S I D  LS++ R++        +  S L +E +  +T   QN G G+    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

RZC08730.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

2.3e-16

37.1

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++LS NV   +  E TT  L+KAL D                        G  V +HINE   IL + E + +K E+EV A+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW  +  AVS+S REN+LK S I D  LS++ R++        +  S L  E    +T   QN G GK    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

RZC29599.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

1.0e-16

37.1

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ NV   +  E TT  L+KAL D                        G  V  HINE   IL + E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW    TAVS+S REN+LK S I D  LS++ R++        +  S L  E    +T   QN G G+    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

RZC29761.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

4.3e-15

35.11

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ +V   +  E TT  L+KAL D                        G  V  HINE   IL + E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR
         LL+SLPDSW    TAVS+S REN+LK S I D  LS++ R++        +  S L  E    +T   QN G G+ N   K  ++++
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR

TrEMBL top hits

e value

%identity

Alignment

A0A445FR60 Nucleolar pre-ribosomal-associated protein 1 isoform B

1.9e-16

36.56

Show/hide

Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ NV   +  E TT  L+KAL D                           V  HINE   IL + E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW    TAVS+S REN+LK S I D  LS++ R++        +  S L +E +  +T   QN G G+    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

A0A445KDD6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-16

37.1

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++LS NV   +  E TT  L+KAL D                        G  V +HINE   IL + E + +K E+EV A+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW  +  AVS+S REN+LK S I D  LS++ R++        +  S L  E    +T   QN G GK    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

A0A445M280 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-17

37.1

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+ +D QA+  IR++L+ NV   +  E TT  L+KAL D                        G  V  HINE   IL + E + +K E+EVKA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE
         LL+SLPDSW    TAVS+S REN+LK S I D  LS++ R++        +  S L  E    +T   QN G G+    GK QR+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRK-----LGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRE

A0A803KVY3 Uncharacterized protein

9.4e-16

34.43

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M +  W  +D QA+  IR++LS NV   +AKETTT  L+KAL +                        G  V  H+NEL  +  +   + +K ++EV A+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR
         LL+SLPDSW    TAVS+S   N LKF  + D  LS+E RR+     +S+  +  E     + ++   G+ NY G Q R+ R
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR

A0A803L175 Uncharacterized protein

1.6e-15

34.43

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Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M +  W  +D QA+  IR++LS NV   +AKETTT  L+KAL +                        G  V  H+NEL  +  +   + +K ++EV A+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQD-----------------------RGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR
         LL+SLPDSW    TAVS+S   N LKF  + D  LS+E RR+     +S+  +  E     + +    G+ NY G Q R+ R
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-06

25.68

Show/hide

Query:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTT-----------------------KELLKALQDRGTLVNSHINELTDILNKFEGMSVKIEEEVKAM
        M  + W+++DE+A + IR+ LS +V + +  E T                        K+L       GT   SH+N    ++ +   + VKIEEE KA+
Subjt:  MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTT-----------------------KELLKALQDRGTLVNSHINELTDILNKFEGMSVKIEEEVKAM

Query:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR
         LL SLP S++ + T + +   + +++   +  A L  E  RK  +     L  E    S   + N   G+    GK +  S+
Subjt:  RLLTSLPDSWETMKTAVSNSLRENSLKFSAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAGACAAGACGTGGAGTGAGATGGATGAGCAGGCCGTTGCAAACATCAGAATGTCGTTATCGATGAATGTTTGCAGTCTGGTGGCGAAAGAGACTACAACG
AAAGAATTGTTGAAGGCATTGCAAGACAGGGGAACCTTGGTGAATTCCCACATTAATGAGCTCACTGATATCTTGAACAAGTTTGAAGGGATGAGTGTCAAGATT
GAAGAGGAGGTGAAAGCTATGAGGCTGTTGACATCTTTGCCTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCGCTAAGGGAAAATAGCTTGAAGTTT
TCAGCTATTTGTGATGCTGCCTTATCTAAGGAAGCCCGGAGAAAATTAGGACAAATGCCTGCATCTACTTTAGGGGTAGAAAATGAGATTGAATCAACTTTGGTT
GCTCAAAACAAAGGGAATGGCAAGATGAATTACAATGGGAAGCAGCAGAGGGAATCCAGGGTGGTGGCAACTGACCACAAGAGATCTTCTATGTATGTGTCAAAG
TTTGAGGTTGCTAGGGGATCTGAGAGACAGATGATGCACAGGGCTGCAAATGGTTCGAGGCGAGACCTTAGAGAATCAACAACATTGACAATCAGAACAAATCAA
ATGAATCTGCCATCAGTTCAAGTACAACATTGGAAAAACGAGTTGATGAAGTCGCATAAGCGAGGGAGTGCATCGAGGGAGAAGACTACAGTGGGTACTGAAGTC
AAGGGGAATGTCTTTCGAAAGGCAACAGACTTGGGTGGGAGCTCCAAGTCATCAAAGGAATCTTCCTTCAGAGGTTCGATCGAGAAAGGAAGCTACAGGGATCAC
TTAGATCGAGTGGGAGCTTGTGGCTGTGTCTCTAGCGTCTGGGAGACAAGACCACGTAGGATTGCTCAATCTCGGGGCAATCACAAACAGAGCTTGAATAGGGCC
GAGCAGTGTGGATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTDKTWSEMDEQAVANIRMSLSMNVCSLVAKETTTKELLKALQDRGTLVNSHINELTDILNKFEGMSVKIEEEVKAMRLLTSLPDSWETMKTAVSNSLRENSLKF
SAICDAALSKEARRKLGQMPASTLGVENEIESTLVAQNKGNGKMNYNGKQQRESRVVATDHKRSSMYVSKFEVARGSERQMMHRAANGSRRDLRESTTLTIRTNQ
MNLPSVQVQHWKNELMKSHKRGSASREKTTVGTEVKGNVFRKATDLGGSSKSSKESSFRGSIEKGSYRDHLDRVGACGCVSSVWETRPRRIAQSRGNHKQSLNRA
EQCG

Moc06g35860 (gene) of Bitter gourd (OHB3-1) v2 genome