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Moc06g36990 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g36990
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionC2H2-like zinc finger protein, putative
Genome locationchr6:28384105..28385323
RNA-Seq ExpressionMoc06g36990
SyntenyMoc06g36990
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606329.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia]9.8e-4259.79Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA S    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        PMYI    AAH +  HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_022159689.1 protein LATE FLOWERING [Momordica charantia]2.1e-9799.46Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
Subjt:  AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]6.8e-4360Show/hide
Query:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP
        HMEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA +    H  + P
Subjt:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP

Query:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
         PMYI    AAH  + HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_023532770.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]2.6e-4259.49Show/hide
Query:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP
        HMEDEE+   V ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA S    H  + P
Subjt:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP

Query:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
         PMYI    AAH ++ HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]4.8e-4962.69Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        ME EEK+SQV E++N  +E EE P+RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY+ TNF SP  P P PP  +F AS    H GL P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        P+YI    A H ++ HCFPNNQ L             +ENMVY G     +RY Q G DE+N+LNW+RS+KK++SRI+HDKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein1.9e-3860.12Show/hide
Query:  EEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAHASHYHCFPN
        EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DY+     SP  P P P   +FAAS    H GL P P+YI    A H ++ HCFPN
Subjt:  EEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAHASHYHCFPN

Query:  NQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        NQ L             +ENMV+ G     +RY Q   DE+N+LNW+R++KK++SRI+HDKEKE+KLDLSLHL
Subjt:  NQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like2.7e-3754.5Show/hide
Query:  MEDEEKVSQVG--ESSNFE-----MEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPP--PPPPPIFAASH-
        ME EE +S+V   E++N +     +E EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DY      S SPP P   P   +FAAS  
Subjt:  MEDEEKVSQVG--ESSNFE-----MEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPP--PPPPPIFAASH-

Query:  ----TGLWPPPMYIAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGS--RYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
             GL P P+YI    A H ++ HCFPNNQ L             +ENMV+ G      ++ +DE+N+LNW+R++K ++SRI+HDKEKE+KLDLSLHL
Subjt:  ----TGLWPPPMYIAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGS--RYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A6J1E329 protein LATE FLOWERING1.0e-9799.46Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
Subjt:  AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING2.4e-4159.28Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDY+ ++  S S      P  +FA +    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        P+YI    AAH ++ HCFPNN Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE +VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like3.3e-4360Show/hide
Query:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP
        HMEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA +    H  + P
Subjt:  HMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWP

Query:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
         PMYI    AAH  + HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PPMYIAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 27.4e-0868.42Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

Q39263 Zinc finger protein 41.4e-1160Show/hide
Query:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

Q42485 Zinc finger protein 13.3e-0843.24Show/hide
Query:  MLRRHTTPIKREHMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK
        +L R T      ++ D  K S    S +   +++    RVF C +C RKF SSQALGGHQNAHK+ERT A++ +
Subjt:  MLRRHTTPIKREHMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK

Q84WI0 Zinc finger protein GIS9.6e-0841.46Show/hide
Query:  HTTPIKREHMEDEEKVSQVGESSNFEMEQEEIP-SRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFP
        +T P + ++ E+EE+  Q G++S    +   I  +R F C +C R F +SQALGGHQNAHK+ER  A++      Y P N P
Subjt:  HTTPIKREHMEDEEKVSQVGESSNFEMEQEEIP-SRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFP

Q9FKA9 Protein LATE FLOWERING1.1e-1133.16Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+   N    +        P+F +S     P   ++
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
               ++   CFP    +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++ LDLSLHL
Subjt:  AAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 76.8e-0969.23Show/hide
Query:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
        E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A
Subjt:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA

AT1G66140.1 zinc finger protein 41.0e-1260Show/hide
Query:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

AT1G80730.1 zinc-finger protein 12.3e-0943.24Show/hide
Query:  MLRRHTTPIKREHMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK
        +L R T      ++ D  K S    S +   +++    RVF C +C RKF SSQALGGHQNAHK+ERT A++ +
Subjt:  MLRRHTTPIKREHMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK

AT5G48890.1 C2H2-like zinc finger protein7.8e-1333.16Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+   N    +        P+F +S     P   ++
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
               ++   CFP    +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++ LDLSLHL
Subjt:  AAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

AT5G57520.1 zinc finger protein 25.2e-0968.42Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAAGACACACCACACCGATCAAGAGAGAGCATATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAA
ATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCG
AGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCGTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGG
CTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCC
ATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAG
AAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTTTCTCTCCATCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAAGACACACCACACCGATCAAGAGAGAGCATATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAA
ATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCG
AGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCGTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGG
CTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCC
ATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAG
AAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTTTCTCTCCATCTATAG
Protein sequenceShow/hide protein sequence
MLRRHTTPIKREHMEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTG
LWPPPMYIAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL