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Moc06g38560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g38560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSm-like protein LSM2
Genome locationchr6:29903184..29907677
RNA-Seq ExpressionMoc06g38560
SyntenyMoc06g38560
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006414 - translational elongation (biological process)
GO:0009628 - response to abiotic stimulus (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0000932 - P-body (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005525 - GTP binding (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5462590.1 hypothetical protein F2P56_018581, partial [Juglans regia]1.7e-4597.87Show/hide
Query:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVD+ELLHDATRREARGG
Subjt:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

KAG9149822.1 hypothetical protein Leryth_023643 [Lithospermum erythrorhizon]6.0e-4698.94Show/hide
Query:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]1.7e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_039061884.1 sm-like protein LSM2 [Hibiscus syriacus]1.3e-4594.95Show/hide
Query:  LKPIAKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        ++ I  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  LKPIAKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_042990944.1 sm-like protein LSM2 [Carya illinoinensis]1.7e-4597.87Show/hide
Query:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVD+ELLHDATRREARGG
Subjt:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

TrEMBL top hitse value%identityAlignment
A0A0B0N830 Sm-like protein LSM28.4e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5B6YXD3 Putative u6 snRNA-associated-like-Smprotein (Fragment)6.5e-4698.94Show/hide
Query:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Subjt:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5B6YXR9 Sm domain-containing protein (Fragment)6.5e-4698.94Show/hide
Query:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Subjt:  KMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2BJZ3 Sm-like protein LSM28.4e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5J5UQ23 Sm-like protein LSM28.4e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm24.6e-3374.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm28.4e-2766.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM26.2e-4694.62Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm21.6e-3067.03Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm24.6e-3374.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein4.4e-4794.62Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

AT3G07590.1 Small nuclear ribonucleoprotein family protein3.5e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G07590.2 Small nuclear ribonucleoprotein family protein3.5e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT4G02840.1 Small nuclear ribonucleoprotein family protein3.5e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCGAAAGAGAGAAGCGGCGTTGAGCGCGGTGGAGGACTACGAACCGCGCGATTGAACAGGGCTCCGTTGAGCAGCCGACGGAGGGATTTGGAACCTATGGGCTT
CCTAGCTCCAACCATTACATTTTTTTCGTACTTCTTAATAGATATTTACTTTGGATACTACTCTTTTGTAGTTCGGGCGGCATTTGAACCTTCACCAGTCGTTGATCGTC
GCGAATTAACTGAAGGCCAGCACCTCAAACCTATAGCGAAAATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTA
GCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTG
TTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCGAAAGAGAGAAGCGGCGTTGAGCGCGGTGGAGGACTACGAACCGCGCGATTGAACAGGGCTCCGTTGAGCAGCCGACGGAGGGATTTGGAACCTATGGGCTT
CCTAGCTCCAACCATTACATTTTTTTCGTACTTCTTAATAGATATTTACTTTGGATACTACTCTTTTGTAGTTCGGGCGGCATTTGAACCTTCACCAGTCGTTGATCGTC
GCGAATTAACTGAAGGCCAGCACCTCAAACCTATAGCGAAAATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTA
GCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTG
TTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA
Protein sequenceShow/hide protein sequence
MGAKERSGVERGGGLRTARLNRAPLSSRRRDLEPMGFLAPTITFFSYFLIDIYFGYYSFVVRAAFEPSPVVDRRELTEGQHLKPIAKMLFFSYFKDLVGREVTVELKNDL
AIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG