CuGenDBv2

Gene ID	Moc06g38930
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	NERD domain-containing protein
Genome location	chr6:30210556..30212991
RNA-Seq Expression	Moc06g38930
Synteny	Moc06g38930
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605718.1 hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-50

81.25

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        +QES D+KLNFVLNTAPMWDRLELKGNN +LGEF+EFKGKKEDMQALR+IKRSKVSCIVIQ+MR + F PSR RVLYS R+Y+N+G SASEWKE+T+GS+
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRKIKIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

XP_004148346.1 uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus]

1.8e-52

85.16

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQ+SMDQKLNFVLNTAPMWDRLEL GNN +LGEF+EFK KKEDMQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRN+GASASEWKEVTVGSS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRK+KIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

XP_022157167.1 uncharacterized protein LOC111023945 [Momordica charantia]

2.1e-61

100

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        TVVVFQMEYSSKVRKIKISTIASLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

XP_022957721.1 uncharacterized protein LOC111459180 [Cucurbita moschata]

1.3e-50

82.03

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        +QES D+KLNFVLNTAPMWDRLELKGNN +LGEF+EFKGKKEDMQALR+IKRSKVSCIVIQ+MR I F PSR RVLYS R+Y+N+G SASEWKE+T+GS+
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRKIKIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

XP_022995191.1 uncharacterized protein LOC111490811 [Cucurbita maxima]

4.4e-51

82.81

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQES D+KLNFVLNTAPMWDRLELKGNN +LGEF+EFKGKKEDMQALR+IKRSKVSCIVIQ+MR I F PSR RVLYS R+Y+N+G SASEWKE+T+GS+
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRKIKIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

8.6e-53

85.16

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQ+SMDQKLNFVLNTAPMWDRLEL GNN +LGEF+EFK KKEDMQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRN+GASASEWKEVTVGSS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRK+KIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

A0A2P6SPY7 NERD domain-containing protein

4.0e-42

69.53

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQES+ QKLNF+L+TAPMWDRLELKGN ++LGEF+EFKGK+ED+QALR IKRSK+S +V+Q+  M+ F PSR +VLY+ RDYR++GASASEWKEV V SS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T VVFQ++ SS+VRK K+S+I S+SLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

A0A6J1DTU9 uncharacterized protein LOC111023945

1.0e-61

100

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        TVVVFQMEYSSKVRKIKISTIASLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

A0A6J1H014 uncharacterized protein LOC111459180

6.2e-51

82.03

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        +QES D+KLNFVLNTAPMWDRLELKGNN +LGEF+EFKGKKEDMQALR+IKRSKVSCIVIQ+MR I F PSR RVLYS R+Y+N+G SASEWKE+T+GS+
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRKIKIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

A0A6J1K1B0 uncharacterized protein LOC111490811

2.1e-51

82.81

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQES D+KLNFVLNTAPMWDRLELKGNN +LGEF+EFKGKKEDMQALR+IKRSKVSCIVIQ+MR I F PSR RVLYS R+Y+N+G SASEWKE+T+GS+
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T+VVFQMEYSSKVRKIKIS+I SLSLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

3.3e-36

60.16

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Query:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS
        MQES  QKLNF+L TAP WDR+ELK +  +LGEF+EFKGK+ED  ALR+IKRSKV  + IQ+  M    PSR +VLYS RDYR++G+S +E KEVTV SS
Subjt:  MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSS

Query:  TVVVFQMEYSSKVRKIKISTIASLSLSA
        T V+FQ   S+K++K K+S++ S+SLSA
Subjt:  TVVVFQMEYSSKVRKIKISTIASLSLSA

Sequences

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CDS sequence

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ATGCAGGAATCTATGGATCAGAAGCTAAATTTTGTCCTCAACACTGCACCCATGTGGGATAGGCTGGAACTTAAAGGAAATAATTTTATTCTGGGAGAATTCATG
GAGTTCAAAGGGAAAAAGGAAGATATGCAGGCTTTGAGAGATATCAAAAGATCAAAAGTTAGTTGCATAGTCATCCAGAGGATGAGAATGATCAGATTTGTTCCT
TCAAGATTTCGAGTTTTATACTCTGCTCGGGATTATCGAAACGACGGGGCCTCTGCTTCTGAGTGGAAGGAAGTAACGGTAGGATCCAGTACAGTGGTAGTATTT
CAGATGGAATATTCTTCTAAAGTTCGAAAAATCAAGATCTCTACAATTGCATCTCTGTCATTGAGTGCCTGA

mRNA sequence

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Protein sequence

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MQESMDQKLNFVLNTAPMWDRLELKGNNFILGEFMEFKGKKEDMQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSSTVVVF
QMEYSSKVRKIKISTIASLSLSA

Moc06g38930 (gene) of Bitter gourd (OHB3-1) v2 genome