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Moc06g39190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g39190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA polymerase delta subunit 4
Genome locationchr6:30555659..30557281
RNA-Seq ExpressionMoc06g39190
SyntenyMoc06g39190
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3372.57Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SDAV P AL+S       DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK GLNPP
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP

Query:  KDIETLLKAGEVQ
        K+IE+LLK G+VQ
Subjt:  KDIETLLKAGEVQ

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]1.2e-3272.81Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS       DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA   GLNP
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP

Query:  PKDIETLLKAGEVQ
        PKDI TLLKAG+VQ
Subjt:  PKDIETLLKAGEVQ

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]2.4e-3373.68Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS       DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   GLNP
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP

Query:  PKDIETLLKAGEVQ
        PKDI TLLKAG+VQ
Subjt:  PKDIETLLKAGEVQ

XP_022156193.1 DNA polymerase delta subunit 4 [Momordica charantia]9.4e-54100Show/hide
Query:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD
        MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD
Subjt:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD

Query:  IETLLKAGEVQ
        IETLLKAGEVQ
Subjt:  IETLLKAGEVQ

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]5.4e-3372.57Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S       DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK GLNPP
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP

Query:  KDIETLLKAGEVQ
        K+IETLLK G+VQ
Subjt:  KDIETLLKAGEVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein5.8e-3372.81Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS       DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA   GLNP
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP

Query:  PKDIETLLKAGEVQ
        PKDI TLLKAG+VQ
Subjt:  PKDIETLLKAGEVQ

A0A1S3CT23 DNA polymerase delta subunit 41.2e-3373.68Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS       DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   GLNP
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP

Query:  PKDIETLLKAGEVQ
        PKDI TLLKAG+VQ
Subjt:  PKDIETLLKAGEVQ

A0A5A7UNL0 DNA polymerase delta subunit 41.2e-3373.68Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS       DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   GLNP
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNP

Query:  PKDIETLLKAGEVQ
        PKDI TLLKAG+VQ
Subjt:  PKDIETLLKAGEVQ

A0A6J1DPY8 DNA polymerase delta subunit 44.5e-54100Show/hide
Query:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD
        MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD
Subjt:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKD

Query:  IETLLKAGEVQ
        IETLLKAGEVQ
Subjt:  IETLLKAGEVQ

A0A6J1H180 uncharacterized protein LOC1114591432.6e-3372.57Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S       DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK GLNPP
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS-----LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPP

Query:  KDIETLLKAGEVQ
        K+IETLLK G+VQ
Subjt:  KDIETLLKAGEVQ

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 41.4e-0745.28Show/hide
Query:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGE
        ++ ++ E +L  FD  + YGP LGMTRM+RW+RA+ F LNPP+ +  +L   E
Subjt:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGE

Q3T0X9 DNA polymerase delta subunit 42.4e-0732.29Show/hide
Query:  RKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQPLMSNCIAKVGHFLP
        R+  S  ++    +  +    L  S+D+  E   +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +L++    P        + HF P
Subjt:  RKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQPLMSNCIAKVGHFLP

Q9CWP8 DNA polymerase delta subunit 42.8e-0844.83Show/hide
Query:  SLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQP
        SL        +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +LKA    P
Subjt:  SLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQP

Q9HCU8 DNA polymerase delta subunit 41.1e-0746.43Show/hide
Query:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQP
        D  E+E  +LRQFD+   YGPC G+TR++RW RA++ GL PP ++  +LK     P
Subjt:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQP

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 42.7e-2759.66Show/hide
Query:  MATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLD---DYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        MAT+A+  +K FYKQTK    GGIS  K KPSSRK  +P +AAA  SD   P AL+S  S+D   DY + E MLRQFDMN  YGPCLGMTR++RWERA +
Subjt:  MATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLD---DYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGEVQ
         G+NPP +IE LLK G+VQ
Subjt:  FGLNPPKDIETLLKAGEVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGGCGGAATCTCTAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGC
CAACGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGTTAGATGATTACAGCGAGTCTGAGAATATGCTGAGGCAATTTGATATGAACAGTG
CCTATGGTCCTTGCCTTGGAATGACTAGAATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCTGGCGAAGTG
CAACCTCTAATGAGTAATTGTATAGCAAAAGTTGGTCACTTTCTTCCTTTCCTAGACAATCCCAGTTCACTGTTTTCTTGTTCACGAGGTTCACTCTCGTCCTGGTGCCC
ACGGAGTTGGAACACTGTGGAATATGCAGTTCTGCAGGTTCTGTATGTTGAATTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGGCGGAATCTCTAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGC
CAACGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGTTAGATGATTACAGCGAGTCTGAGAATATGCTGAGGCAATTTGATATGAACAGTG
CCTATGGTCCTTGCCTTGGAATGACTAGAATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCTGGCGAAGTG
CAACCTCTAATGAGTAATTGTATAGCAAAAGTTGGTCACTTTCTTCCTTTCCTAGACAATCCCAGTTCACTGTTTTCTTGTTCACGAGGTTCACTCTCGTCCTGGTGCCC
ACGGAGTTGGAACACTGTGGAATATGCAGTTCTGCAGGTTCTGTATGTTGAATTCTCTTGA
Protein sequenceShow/hide protein sequence
MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEV
QPLMSNCIAKVGHFLPFLDNPSSLFSCSRGSLSSWCPRSWNTVEYAVLQVLYVEFS