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Moc06g39700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g39700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:31043769..31045266
RNA-Seq ExpressionMoc06g39700
SyntenyMoc06g39700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN69998.1 hypothetical protein VITISV_006839 [Vitis vinifera]5.9e-2238.66Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---
        E     GI KFDG NF YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKAL   YEKPSANNK   
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---

Query:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS
                                                    +L SL  SWE M+ AV N +G + LK++ I D  +AEEIRR  +G+ S S
Subjt:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS

RVW41523.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.7e-2238.1Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKAL   YEKPSANNK   
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---

Query:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSSTQDSVL
                                                    +L SL  SWE M+ AV N +G + LK++ I D  +AEEIRR  +G+ S S   S L
Subjt:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSSTQDSVL

Query:  AVE-KGKEKV
         +E +G+E+V
Subjt:  AVE-KGKEKV

RVW60263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.7e-2238.1Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKAL   YEKPSANNK   
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---

Query:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSSTQDSVL
                                                    +L SL  SWE M+ AV N +G + LK++ I D  +AEEIRR  +G+ S S   S L
Subjt:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSSTQDSVL

Query:  AVE-KGKEKV
         +E +G+E+V
Subjt:  AVE-KGKEKV

RVW76343.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.5e-2245.16Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKA    YEKPSANNK+  
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--

Query:  -----LTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST
                +AE+ E M+ AV N +G + LK++ I D  +AEEIRR  +G+ S S+
Subjt:  -----LTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST

RVX04667.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.5e-2246.26Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKAL   YEKPSANNKL  
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT

Query:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS
                M+ AV N +G + LK++ I D  +AEEIR+  +G+ S S
Subjt:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS

TrEMBL top hitse value%identityAlignment
A0A438GVW5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-2245.16Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKA    YEKPSANNK+  
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--

Query:  -----LTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST
                +AE+ E M+ AV N +G + LK++ I D  +AEEIRR  +G+ S S+
Subjt:  -----LTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST

A0A438J6T4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-2246.26Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T  DLMKAL   YEKPSANNKL  
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT

Query:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS
                M+ AV N +G + LK++ I D  +AEEIR+  +G+ S S
Subjt:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS

A0A7N2LG47 Integrase catalytic domain-containing protein7.6e-2338.66Show/hide
Query:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---
        E     GI KFDG +F YW+MQI+DYL  +KL+   L  +P  MK E+W   + QV+  IRL LS ++A  V  E T +DLMKAL   YEKPSANNK   
Subjt:  EKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLN-KALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---

Query:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS
                                                    +L SL  SWETM+ AV N +G + LK++ I D  +AEEIRR  +G+ S S
Subjt:  --------------------------------------------LLTSLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSS

A0A803L407 Uncharacterized protein7.6e-2345.95Show/hide
Query:  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---------LLT
        KFDG +F +WKMQI+DYL  KKL + L+E +P GM+  +W   + Q +  IRL LS N+A  +A E T   LMKAL N YEKPSA+NK         L  
Subjt:  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNK---------LLT

Query:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST
        S  + W    TA+ + SG+  LKF  + D  ++EEIRR  SG+ SSS+
Subjt:  SLAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST

A0A803L6Q2 Uncharacterized protein9.9e-2346.26Show/hide
Query:  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--------LTS
        KFDG +F +WKMQI+DYL  KKL + L+E +P GM+  +W   + Q +  IRL LS N+A  +A E T   LMKAL N YEKPSA+NK+        L  
Subjt:  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKL--------LTS

Query:  LAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST
          +SW    T+V + SG+  LKF    D  ++EEIRR  SG+ SSS+
Subjt:  LAESWETMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29785.1 unknown protein1.0e-1140Show/hide
Query:  KFDGANFEYWKMQIKDYLTCKKLNKALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT
        K DG ++ + +M+I+DYL  KKL++ L ++   M  +DW     QV+  IRL +S N+A  VA E +   LMK L + Y+KPS NN +++
Subjt:  KFDGANFEYWKMQIKDYLTCKKLNKALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGTAGAGAAGTCAAGTTTTGAAGGAATCATGAAATTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAA
TAAAGCTTTAAAAGAACGACCAGGAGGGATGAAATATGAAGATTGGGTAGAGACGAATGAACAGGTAGTTGCTTTTATCAGATTGTGTTTATCGATGAATATGGCAAGTC
TCGTAGCAAACGAAATGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGTTGCTAACATCTTTAGCTGAAAGTTGGGAA
ACGATGAAGACAGCAGTGTTCAATTTGTCAGGAGACAAATCTTTGAAATTTTCAAAAATATGTGATGCGGCAATTGCTGAAGAAATTCGTAGAAATGGGAGTGGAAAAGA
ATCTTCTTCCACACAAGACTCAGTATTGGCTGTCGAAAAAGGTAAAGAGAAGGTTGCATTTGATGATAGTGAGTTTGGTGAGAACCAGTGGAAGCTCACCAAAGGATCCA
AGTTGGTGGCAGTTGGTCATAAAAGATCTACAGTTTACATGTCGCAGTTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAAATGGTGTCCAAAGAGAT
AGGACGGAGCCAGCAACAAAGACAACCAGAACAGATCAAAAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGAACGATAACAGTTGCATCAAAGAAGACGAACCC
AGTCGGTGCTGAGGTAAAGAATGGAGTTTCAATTATGGCAACAGGCTTGAATAGAGTTGTCAAGTCATCAGTAGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAAAACGA
AGAAGGAAGCTTCAGATATCGCCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAGTAGAGAAGTCAAGTTTTGAAGGAATCATGAAATTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAA
TAAAGCTTTAAAAGAACGACCAGGAGGGATGAAATATGAAGATTGGGTAGAGACGAATGAACAGGTAGTTGCTTTTATCAGATTGTGTTTATCGATGAATATGGCAAGTC
TCGTAGCAAACGAAATGACAGCAATAGATCTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGTTGCTAACATCTTTAGCTGAAAGTTGGGAA
ACGATGAAGACAGCAGTGTTCAATTTGTCAGGAGACAAATCTTTGAAATTTTCAAAAATATGTGATGCGGCAATTGCTGAAGAAATTCGTAGAAATGGGAGTGGAAAAGA
ATCTTCTTCCACACAAGACTCAGTATTGGCTGTCGAAAAAGGTAAAGAGAAGGTTGCATTTGATGATAGTGAGTTTGGTGAGAACCAGTGGAAGCTCACCAAAGGATCCA
AGTTGGTGGCAGTTGGTCATAAAAGATCTACAGTTTACATGTCGCAGTTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAAATGGTGTCCAAAGAGAT
AGGACGGAGCCAGCAACAAAGACAACCAGAACAGATCAAAAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGAACGATAACAGTTGCATCAAAGAAGACGAACCC
AGTCGGTGCTGAGGTAAAGAATGGAGTTTCAATTATGGCAACAGGCTTGAATAGAGTTGTCAAGTCATCAGTAGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAAAACGA
AGAAGGAAGCTTCAGATATCGCCACTTAG
Protein sequenceShow/hide protein sequence
MGSVEKSSFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPGGMKYEDWVETNEQVVAFIRLCLSMNMASLVANEMTAIDLMKALENRYEKPSANNKLLTSLAESWE
TMKTAVFNLSGDKSLKFSKICDAAIAEEIRRNGSGKESSSTQDSVLAVEKGKEKVAFDDSEFGENQWKLTKGSKLVAVGHKRSTVYMSQLSVARGSLKQWMQVANGVQRD
RTEPATKTTRTDQKDLPSIQEQQLGRTITVASKKTNPVGAEVKNGVSIMATGLNRVVKSSVGSSFFKNQCLKTKKEASDIAT