; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc06g40330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g40330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU6 snRNA phosphodiesterase
Genome locationchr6:31542303..31545357
RNA-Seq ExpressionMoc06g40330
SyntenyMoc06g40330
Gene Ontology termsGO:0034477 - U6 snRNA 3'-end processing (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990838 - poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends (molecular function)
InterPro domainsIPR027521 - U6 snRNA phosphodiesterase Usb1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017094.1 U6 snRNA phosphodiesterase [Cucurbita argyrosperma subsp. argyrosperma]2.8e-10379.22Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        M+AL ASY GSSSDE+ D VS+A +  S   P  S        LPPPPLSLLDFPNS SAL DLPI Q +R RSFPHV+GNYALH+YIPVYIPT ++KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKK+S LVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        GLMEIRK IQVVNEVYK HNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+
Subjt:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

XP_022155865.1 U6 snRNA phosphodiesterase [Momordica charantia]1.2e-133100Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
        SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
Subjt:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

XP_023549871.1 U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo]9.0e-10277.43Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS----------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKK
        M+AL ASY GSSSDE+ D VS + +  S     P           LPPPPLSLLDFPNS SAL DLPI Q  R RSFPHV+GNYA+H+YIPVYIPT ++K
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS----------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKK

Query:  EVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEII
        EV LFLKK+S LVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII
Subjt:  EVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEII

Query:  AGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        AGGLMEIRK IQVVNEVYK HNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+
Subjt:  AGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]5.3e-10275.95Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        MDAL+ASY GSSSDEE D VS + +  S   P  S        LPPP  SLL FPNS S L DLPI Q TR RSFPHV+GNYALH+YIPVY+PT  +KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKKVSSLVP+LHLVDIDVPL  LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII G
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI
        GLMEIRKQIQ+VNEVYK HNLPEFYKE RPHISLAWA+GDLSKLLS+ V ++MK   ++ T+
Subjt:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI

XP_038875355.1 U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]5.3e-10275.95Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        MDAL+ASY GSSSDEE D VS + +  S   P  S        LPPP  SLL FPNS S L DLPI Q TR RSFPHV+GNYALH+YIPVY+PT  +KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKKVSSLVP+LHLVDIDVPL  LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII G
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI
        GLMEIRKQIQ+VNEVYK HNLPEFYKE RPHISLAWA+GDLSKLLS+ V ++MK   ++ T+
Subjt:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI

TrEMBL top hitse value%identityAlignment
A0A0A0KPH5 U6 snRNA phosphodiesterase7.7e-9976.28Show/hide
Query:  MDALKASYRGSSSDEEDDIVS------TAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL
        MDAL+ASY GSSSDEE D VS      +AP  L        LPPPPLSLL+FPNS   L DLPI Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV L
Subjt:  MDALKASYRGSSSDEEDDIVS------TAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL

Query:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL
        F+KK+SSLVP+LHLVDID+PL  LCKD+ KLEQA AREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWETFVNDDLSRTFLSMEII GGL
Subjt:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL

Query:  MEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        MEIRKQIQVVNEVYK HNLPEFYKE RPHIS+AWALGD+S+L S+ V +++KR
Subjt:  MEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

A0A1S3CTB0 U6 snRNA phosphodiesterase8.2e-10176.68Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPP------PPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL
        MDAL+ASY GSSSDEE D VS + +  S P           LPPPPLSLL+FPNS   L DLPI Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV L
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPP------PPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL

Query:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL
        F+KK+SSLVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWETFVNDDLSRTFLSMEII GGL
Subjt:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL

Query:  MEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        MEIRKQIQVVNEVYK HNLPEFYKE RPHISLAWALGD+S++ S+ V +++KR
Subjt:  MEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

A0A6J1DNL4 U6 snRNA phosphodiesterase5.6e-134100Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
        SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
Subjt:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

A0A6J1EQH7 U6 snRNA phosphodiesterase5.7e-10278.43Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        M+AL ASY GSSSDE+ D VS + +  S   P  S        LPPPPLSLLDFPNS SAL DLPI Q  R RSFPHV+GNYALH+YIPVYI T ++KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKK+S LVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        GLMEIRK IQVVNEVYK HNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+
Subjt:  GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

A0A6J1HYN3 U6 snRNA phosphodiesterase3.1e-10076.63Show/hide
Query:  MDALKASYRGSSSDEEDDIVS------TAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPT
        M+AL ASY GSSSDE+ D VS      +A +  S   P  S        LPPPPLSLLDFPNS SAL DLPI Q  R RSFPHV+GNYA+H+YIPVYIPT
Subjt:  MDALKASYRGSSSDEEDDIVS------TAPSDLSPPPPPPS--------LPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPT

Query:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS
         ++KEV LFLKK+S LVP+LHLVDID+PL  LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLS
Subjt:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS

Query:  MEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR
        MEIIAGGLMEIRK+IQVVNEVYK HNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+
Subjt:  MEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKR

SwissProt top hitse value%identityAlignment
Q5I0I5 U6 snRNA phosphodiesterase1.9e-1426.72Show/hide
Query:  SSSDEEDDIVSTAPSDLSP----------PPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        SSS  ED+  + A     P          P P    P P   L  FP++     D       R R+FPH  GN+A H+YIP       +  + + L +  
Subjt:  SSSDEEDDIVSTAPSDLSP----------PPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
           P L  ++                     EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + +RTF+ +E ++ G  +    
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGD
        +  V+ V K  +L  FY++   H+SLAW +GD
Subjt:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGD

Q6DEF6 U6 snRNA phosphodiesterase2.7e-1633.17Show/hide
Query:  PSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREF
        P LP P      F +S     D       R RSF H  GN+A +V+ P Y P  +  EV   L K+ +   +      D+PLT            ++ EF
Subjt:  PSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREF

Query:  HISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG--GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALG
        H+SLS+TV +R H I   V  +R  L   ++++    K + + N + +RTFL ME+  G   L+E+ K   +V+E  K  NL  FY++   HISLAW +G
Subjt:  HISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG--GLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALG

Query:  DLSKLLSR
        D ++ L +
Subjt:  DLSKLLSR

Q7ZYI9 U6 snRNA phosphodiesterase1.2e-1630.36Show/hide
Query:  SSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLP--IAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHL
        SSS+E++   S  P    PP PPP+      ++L     +    DL        R RSF H  GN+A +VYIP                      P    
Subjt:  SSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLP--IAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHL

Query:  VDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVY
        +D+   L S+  +   L   ++ EFHIS S+TV +R H I+  V  L+ KL C  R+     + + + N + +RTFL +E ++ G+  + + +  V+   
Subjt:  VDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVY

Query:  KFHNLPEFYKEERPHISLAWALGD
        +  NL  FY+E   H+SLAW +GD
Subjt:  KFHNLPEFYKEERPHISLAWALGD

Q91W78 U6 snRNA phosphodiesterase2.7e-1628.21Show/hide
Query:  SSSDEEDDIVSTAPSDLSP----------PPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        SSS  ED+  + A     P          P P   LP P   L  FP++     D       R R+FPH  GN+A H+YIP       +  +   L +  
Subjt:  SSSDEEDDIVSTAPSDLSP----------PPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
          VP L L++                     EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + +RTF+ +E ++ G  +    
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLS
        +  V+   K  +L  FY++   HISLAW +GD S
Subjt:  IQVVNEVYKFHNLPEFYKEERPHISLAWALGDLS

Q9BQ65 U6 snRNA phosphodiesterase4.3e-1427.88Show/hide
Query:  SSDEEDDIVSTAPSDLS-----PPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL
        S DE +D + T P D S      P P    P P   L  FP +     D       R R+FPH  GN+A HVY+P          + + L    + VP L
Subjt:  SSDEEDDIVSTAPSDLS-----PPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL

Query:  HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNE
          + +                     FH+SLS++V +R H I   V  L+ ++    R++   ++ + + N + +RTF+ +E+ +G   +    +  V+ 
Subjt:  HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNE

Query:  VYKFHNLPEFYKEERPHISLAWALGD
        V +  NL  FY++   H+SLAW +GD
Subjt:  VYKFHNLPEFYKEERPHISLAWALGD

Arabidopsis top hitse value%identityAlignment
AT5G51170.1 unknown protein5.7e-7858.56Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPP---------SLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKE
        M+AL+ASY  SSSD + D       DLSP  P           SLPPPPL+LLD   S  +L         R R+FPHV+GNYALHVY+PV IP   KKE
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPP---------SLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKE

Query:  VVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIA
        +V FLKKV+S+VP LHLV+ DVPL+ LCKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI  
Subjt:  VVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIA

Query:  GGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI
         GL EI KQI  VNEVYK HNLPEFYK+ RPHISL WALGD+   L   VD +++++   G +
Subjt:  GGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRVYILGTI

AT5G51170.2 unknown protein6.5e-5856.81Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPP---------SLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKE
        M+AL+ASY  SSSD + D       DLSP  P           SLPPPPL+LLD   S  +L         R R+FPHV+GNYALHVY+PV IP   KKE
Subjt:  MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPP---------SLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKE

Query:  VVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIA
        +V FLKKV+S+VP LHLV+ DVPL+ LCKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI  
Subjt:  VVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIA

Query:  GGLMEIRKQIQVV
         GL E+  ++ ++
Subjt:  GGLMEIRKQIQVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGTCAGACTTGTCGCCGCCGCCGCCGCCTCCGTCTCTGCC
ACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAATCGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAAACT
ATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTTGAT
ATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCACCA
GATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGACCT
TCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGTTCCACAATCTTCCTGAATTTTACAAGGAAGAG
AGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGGTGTACATTCTTGGCACCATTGATATAAA
AGAGCTCCGGAATCATGTTAGGAAATGGAGGGAACACTGGGAGTTTGCGAGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGTCAGACTTGTCGCCGCCGCCGCCGCCTCCGTCTCTGCC
ACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAATCGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAAACT
ATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTTGAT
ATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCACCA
GATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGACCT
TCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGTTCCACAATCTTCCTGAATTTTACAAGGAAGAG
AGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGGTGTACATTCTTGGCACCATTGATATAAA
AGAGCTCCGGAATCATGTTAGGAAATGGAGGGAACACTGGGAGTTTGCGAGTAGATAA
Protein sequenceShow/hide protein sequence
MDALKASYRGSSSDEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLPIAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVD
IDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEE
RPHISLAWALGDLSKLLSRVVDDKMKRVYILGTIDIKELRNHVRKWREHWEFASR