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Moc06g40880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc06g40880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDEA(D/H)-box RNA helicase family protein
Genome locationchr6:32057960..32058334
RNA-Seq ExpressionMoc06g40880
SyntenyMoc06g40880
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159775.1 probable DEAD-box ATP-dependent RNA helicase 48 [Momordica charantia]2.8e-55100Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGA
        HIKALANRFMKEGA
Subjt:  HIKALANRFMKEGA

XP_022928821.1 probable DEAD-box ATP-dependent RNA helicase 48 [Cucurbita moschata]2.2e-4787.83Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLL+RH+ FSSLLCK IFSRSMGGGPRTFPGG+NKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR KLAG  + S NSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HI ALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

XP_023551234.1 probable DEAD-box ATP-dependent RNA helicase 48 isoform X1 [Cucurbita pepo subsp. pepo]2.2e-4787.83Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLL+RH+ FSSLLCK IFSRSMGGGPRTFPGG+NKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR KLAG  + S NSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HI ALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

XP_023551235.1 probable DEAD-box ATP-dependent RNA helicase 48 isoform X2 [Cucurbita pepo subsp. pepo]2.2e-4787.83Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLL+RH+ FSSLLCK IFSRSMGGGPRTFPGG+NKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR KLAG  + S NSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HI ALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

XP_038875808.1 probable DEAD-box ATP-dependent RNA helicase 48 [Benincasa hispida]1.4e-4990.43Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLL RH+TFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR K+AGV +TS NSDPST YSPM+PSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HIKALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

TrEMBL top hitse value%identityAlignment
A0A1S3AT64 probable DEAD-box ATP-dependent RNA helicase 481.2e-4686.21Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTS-SNSDPSTSYSPMSPS
        MTSSVLL RH+TFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAK+KEKRLL+QEKQLYQAR+RSEIR KL G  +TS +NSDPSTSYSP SPS
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTS-SNSDPSTSYSPMSPS

Query:  EHIKALANRFMKEGAM
        EHIK LANRFMK+GA+
Subjt:  EHIKALANRFMKEGAM

A0A5A7TMI7 Putative DEAD-box ATP-dependent RNA helicase 484.4e-4685.34Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTS-SNSDPSTSYSPMSPS
        MTSSVLL RH+TFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAK+KEKRLL+QEKQLY AR+RSEIR KL G  +TS +NSDPSTSYSP SPS
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTS-SNSDPSTSYSPMSPS

Query:  EHIKALANRFMKEGAM
        EHIK LANRFMK+GA+
Subjt:  EHIKALANRFMKEGAM

A0A6J1DZQ8 probable DEAD-box ATP-dependent RNA helicase 481.4e-55100Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGA
        HIKALANRFMKEGA
Subjt:  HIKALANRFMKEGA

A0A6J1ELD4 probable DEAD-box ATP-dependent RNA helicase 481.1e-4787.83Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        MTSSVLL+RH+ FSSLLCK IFSRSMGGGPRTFPGG+NKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR KLAG  + S NSDPSTSYSPMSPSE
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HI ALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

A0A6J1HXQ2 probable DEAD-box ATP-dependent RNA helicase 484.4e-4685.22Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE
        M SSVLL+RH+ FSSLLCK +FSRSMGGGPRTFPGG+NKWQWKRMHEKRAKEKEKRLL+QEKQLYQARVRSEIR KLAG  + S NSDPSTSYSPMSP E
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSE

Query:  HIKALANRFMKEGAM
        HI ALANRFMKEGA+
Subjt:  HIKALANRFMKEGAM

SwissProt top hitse value%identityAlignment
O80792 Putative DEAD-box ATP-dependent RNA helicase 331.3e-3164.22Show/hide
Query:  LQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDP-STSYSPMSPSEHIKAL
        L +  T    L   IFSR+MGGGPRTFPGGLNKWQWKRMHEK+A+EKE +LLDQEKQLY+AR+R+EIR K+ G PD+   +     S+ PMSP EHIK L
Subjt:  LQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDP-STSYSPMSPSEHIKAL

Query:  ANRFMKEGA
        A+RFMK GA
Subjt:  ANRFMKEGA

Q6K7R9 DEAD-box ATP-dependent RNA helicase 481.9e-1758.43Show/hide
Query:  MGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSEHIKALANRFMKEGA
        MGGGPRTFPGGL+KWQ KRMHEK A+ KE+ LL  EKQLY AR+RSEIR   A     +  S P     P S   HI+ALA+RF+  GA
Subjt:  MGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSEHIKALANRFMKEGA

Q9C8S9 Probable DEAD-box ATP-dependent RNA helicase 483.5e-3262.61Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPS-TSYSPMSPS
        M S +L +R  + +  L   I SR+MGGGPRTFPGGLNKWQWKRMHEK+A+EKE +LLDQEKQLY+AR+R+EIR K+ G PD+   +  S  S+ PMSP 
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPS-TSYSPMSPS

Query:  EHIKALANRFMKEGA
        EHIK LA+RFMK GA
Subjt:  EHIKALANRFMKEGA

Arabidopsis top hitse value%identityAlignment
AT1G63250.1 DEA(D/H)-box RNA helicase family protein2.5e-3362.61Show/hide
Query:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPS-TSYSPMSPS
        M S +L +R  + +  L   I SR+MGGGPRTFPGGLNKWQWKRMHEK+A+EKE +LLDQEKQLY+AR+R+EIR K+ G PD+   +  S  S+ PMSP 
Subjt:  MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPS-TSYSPMSPS

Query:  EHIKALANRFMKEGA
        EHIK LA+RFMK GA
Subjt:  EHIKALANRFMKEGA

AT2G07750.1 DEA(D/H)-box RNA helicase family protein9.5e-3364.22Show/hide
Query:  LQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDP-STSYSPMSPSEHIKAL
        L +  T    L   IFSR+MGGGPRTFPGGLNKWQWKRMHEK+A+EKE +LLDQEKQLY+AR+R+EIR K+ G PD+   +     S+ PMSP EHIK L
Subjt:  LQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDP-STSYSPMSPSEHIKAL

Query:  ANRFMKEGA
        A+RFMK GA
Subjt:  ANRFMKEGA

AT2G37920.1 copper ion transmembrane transporters6.4e-1342.05Show/hide
Query:  MGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSEHIKALANRFMKEG
        MGGGPRTFPGG++KWQWKRM  K+ K+  K  L +E+Q+Y+ R R+E++  +A +           +   +   E +K LA+RF K G
Subjt:  MGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSEHIKALANRFMKEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCGTCGGTTCTTCTACAGCGTCACCAGACCTTTTCGAGCCTTCTATGTAAGCTCATTTTCTCACGGTCCATGGGCGGCGGTCCTCGGACCTTCCCTGGAGGCCT
CAACAAGTGGCAATGGAAGCGGATGCACGAGAAAAGAGCGAAAGAGAAGGAGAAAAGGCTTCTTGATCAGGAGAAGCAGCTTTACCAGGCTCGAGTTCGTTCCGAAATAC
GCTGCAAGCTTGCTGGTGTGCCTGATACTTCATCGAATTCGGATCCTTCTACCAGTTATTCCCCTATGAGCCCCAGCGAGCACATTAAAGCCCTAGCTAACAGGTTCATG
AAGGAGGGAGCGATGATTTGTGGAATGAAGATGATGGTCCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCGTCGGTTCTTCTACAGCGTCACCAGACCTTTTCGAGCCTTCTATGTAAGCTCATTTTCTCACGGTCCATGGGCGGCGGTCCTCGGACCTTCCCTGGAGGCCT
CAACAAGTGGCAATGGAAGCGGATGCACGAGAAAAGAGCGAAAGAGAAGGAGAAAAGGCTTCTTGATCAGGAGAAGCAGCTTTACCAGGCTCGAGTTCGTTCCGAAATAC
GCTGCAAGCTTGCTGGTGTGCCTGATACTTCATCGAATTCGGATCCTTCTACCAGTTATTCCCCTATGAGCCCCAGCGAGCACATTAAAGCCCTAGCTAACAGGTTCATG
AAGGAGGGAGCGATGATTTGTGGAATGAAGATGATGGTCCGTTGA
Protein sequenceShow/hide protein sequence
MTSSVLLQRHQTFSSLLCKLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLDQEKQLYQARVRSEIRCKLAGVPDTSSNSDPSTSYSPMSPSEHIKALANRFM
KEGAMICGMKMMVR