CuGenDBv2

Gene ID	Moc07g00230
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr7:120777..121499
RNA-Seq Expression	Moc07g00230
Synteny	Moc07g00230
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0034645 - cellular macromolecule biosynthetic process (biological process) GO:0044271 - cellular nitrogen compound biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039608.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-68

59.58

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHPY GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADK RRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  +N VT P I L++K DK+VE IPAER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-69

66.35

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+  K+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  R---------FRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEF
        R         + VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+LVKWK LP EE  WER EDLK     IE+F
Subjt:  R---------FRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEF

Query:  EQRQLTGTSTI
        + RQLTGTSTI
Subjt:  EQRQLTGTSTI

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-68

59.58

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+ GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.6e-68

59.58

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+ GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

XP_022148918.1 uncharacterized protein LOC111017468 [Momordica charantia]

1.7e-94

87.62

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        MLDV Q CFNCQKSTTTG T FEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEW QS EVA+AYLEKASKHMKKWADKKRRPLEFQAG QVLVKLRPEQL
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTS
        RF+VIHVSNLK YH DTVDPTRNE+T PAI LT KVDKEVESI AERTRR+  PRRD+QEFLVKWKGLPDEEI WE TEDLKT  AAIEEFEQR+LTGTS
Subjt:  RFRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTS

Query:  TI
        TI
Subjt:  TI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9P9 Reverse transcriptase

6.1e-69

59.58

Show/hide

Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHPY GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADK RRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  +N VT P I L++K DK+VE IPAER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

A0A5A7UY33 Reverse transcriptase

9.4e-70

66.35

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+  K+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  R---------FRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEF
        R         + VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+LVKWK LP EE  WER EDLK     IE+F
Subjt:  R---------FRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEF

Query:  EQRQLTGTSTI
        + RQLTGTSTI
Subjt:  EQRQLTGTSTI

A0A5D3C4R1 Reverse transcriptase

8.0e-69

59.58

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+ GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

A0A5D3DBE0 Reverse transcriptase

8.0e-69

59.58

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        +LDV QFCFN Q S++TG + FEIV GRQPVLPH+VDHP+ GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+AGDQVL+KLRPEQ+
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL
        RFR                                      VIHVSNLK YH DT D  RN VT P I L++K DK+VE I AER RR  RP R + E+L
Subjt:  RFR--------------------------------------VIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFL

Query:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI
        VKWK LP EE SWER EDL+     IE+F+ RQLTGTSTI
Subjt:  VKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

A0A6J1D5E5 uncharacterized protein LOC111017468

8.4e-95

87.62

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Query:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL
        MLDV Q CFNCQKSTTTG T FEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEW QS EVA+AYLEKASKHMKKWADKKRRPLEFQAG QVLVKLRPEQL
Subjt:  MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQL

Query:  RFRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTS
        RF+VIHVSNLK YH DTVDPTRNE+T PAI LT KVDKEVESI AERTRR+  PRRD+QEFLVKWKGLPDEEI WE TEDLKT  AAIEEFEQR+LTGTS
Subjt:  RFRVIHVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTS

Query:  TI
        TI
Subjt:  TI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G13370.1 chromatin remodeling 5

8.9e-04

38.1

Show/hide

Query:  KVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLT
        K + +VE I A+R  + G     V E+LVKW+GL   E +WE+  D+  A  AI+E++ R+++
Subjt:  KVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLT

Sequences

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CDS sequence

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ATGCTCGATGTAGTTCAATTCTGTTTCAATTGCCAAAAGAGCACCACCACAGGAAGTACCACTTTCGAAATCGTGTGTGGGCGACAACCTGTGTTACCTCATGTT
GTCGACCATCCTTATGTGGGCAAGAGCCCTCAAGCCTATAATTTCACTAAGGAATGGCGTCAATCCACCGAAGTGGCCCGAGCATACCTAGAGAAGGCGTCTAAA
CACATGAAAAAGTGGGCAGACAAAAAGCGAAGACCATTAGAATTCCAGGCAGGAGATCAAGTCCTTGTGAAGCTGAGACCTGAACAACTTCGTTTTCGAGTAATC
CACGTGAGCAACTTGAAGTCTTACCACCCCGACACCGTCGACCCTACACGAAACGAGGTAACCTGTCCAGCAATCACGTTAACAAAAAAGGTTGACAAAGAAGTT
GAGTCAATCCCCGCTGAAAGAACACGCCGATTAGGAAGACCACGAAGGGACGTACAGGAATTCCTAGTCAAGTGGAAAGGGCTCCCAGATGAAGAGATAAGTTGG
GAGCGTACTGAAGACCTGAAGACAGCTGCAGCAGCAATTGAAGAGTTCGAGCAGCGACAGTTGACGGGGACGTCAACCATATAA

mRNA sequence

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Protein sequence

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MLDVVQFCFNCQKSTTTGSTTFEIVCGRQPVLPHVVDHPYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQAGDQVLVKLRPEQLRFRVI
HVSNLKSYHPDTVDPTRNEVTCPAITLTKKVDKEVESIPAERTRRLGRPRRDVQEFLVKWKGLPDEEISWERTEDLKTAAAAIEEFEQRQLTGTSTI

Moc07g00230 (gene) of Bitter gourd (OHB3-1) v2 genome