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Moc07g01980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g01980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description60S ribosomal protein L38
Genome locationchr7:1543722..1544494
RNA-Seq ExpressionMoc07g01980
SyntenyMoc07g01980
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF28545.1 60S ribosomal protein L38, putative [Ricinus communis]4.1e-2685.71Show/hide
Query:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L L +  ++ F   LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAF2322016.1 hypothetical protein GH714_005702 [Hevea brasiliensis]1.8e-2696.92Show/hide
Query:  ESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        E++PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  ESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

PKA55937.1 60S ribosomal protein L38 [Apostasia shenzhenica]4.1e-2683.12Show/hide
Query:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +D S   ++  I+  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

WP_139162005.1 hypothetical protein, partial [Acinetobacter baumannii]4.1e-2698.44Show/hide
Query:  SLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  SLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

XP_024031168.1 60S ribosomal protein L38-like [Morus notabilis]4.1e-2698.44Show/hide
Query:  SLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        S+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  SLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A022RH54 Uncharacterized protein2.0e-2693.94Show/hide
Query:  IESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        IE++PKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFD+EKADKLKQSLPPG
Subjt:  IESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A2I0AK66 60S ribosomal protein L382.0e-2683.12Show/hide
Query:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +D S   ++  I+  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A6A6NBP2 GRAS domain-containing protein8.9e-2796.92Show/hide
Query:  ESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        E++PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  ESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A803KTJ6 Uncharacterized protein5.2e-2784.21Show/hide
Query:  DLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        D + A+  +++E  PKQIHEIKDFLLTARRKDARSVKIK+SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  DLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

B9T6H4 60S ribosomal protein L38, putative2.0e-2685.71Show/hide
Query:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L L +  ++ F   LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.0e-2793.65Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P46291 60S ribosomal protein L381.2e-2588.89Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P63173 60S ribosomal protein L381.4e-2177.78Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q32PB9 60S ribosomal protein L381.4e-2177.78Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q95V84 60S ribosomal protein L388.9e-2484.13Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family7.2e-2993.65Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

AT3G59540.1 Ribosomal L38e protein family7.2e-2993.65Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATTGGTCATCTTGATTTGTCATTGGCTTCTGTTTATCTGTTTATTGAGTCATTGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAA
GGACGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTCGTCAAGTTCAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACA
AGTTGAAGCAGTCTCTTCCACCAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTATTGGTCATCTTGATTTGTCATTGGCTTCTGTTTATCTGTTTATTGAGTCATTGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAA
GGACGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTCGTCAAGTTCAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACA
AGTTGAAGCAGTCTCTTCCACCAGGTTAA
Protein sequenceShow/hide protein sequence
MIIGHLDLSLASVYLFIESLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG