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Moc07g03610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g03610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionreplication protein A 70 kDa DNA-binding subunit B-like
Genome locationchr7:3142736..3143486
RNA-Seq ExpressionMoc07g03610
SyntenyMoc07g03610
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5560633.1 hypothetical protein RHGRI_003829 [Rhododendron griersonianum]3.8e-2234.02Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIE----
        LTLWGD+A NEG  +E+     P +  + VKI  Y G +S+ST   + + +DP+  + + +  R    L  T     +  +  + A+ V I +++E    
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIE----

Query:  GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
           N TYCS  A II + N E PWY  CK+C ++V P +  +   C+ C +KN     +Y++K+ V DGE   +IT FEA + + GC V D ++
Subjt:  GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

KAG5563555.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]6.5e-2235.38Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQE-AKVVSIQNLIE---
        LTLWGD+A NEG  +E+     P +  + VKI  Y G +S+ST   + + +DP+  + + +  R    L   KM     S + +E A+ V I +++E   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQE-AKVVSIQNLIE---

Query:  -GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
            N TYCS  A II + N E PWY  CK+C ++V P +  +   C+ C +KN     +Y++K+ V DGE   +IT FEA + + GC V D ++
Subjt:  -GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

KAG5563556.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]6.5e-2235.38Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQE-AKVVSIQNLIE---
        LTLWGD+A NEG  +E+     P +  + VKI  Y G +S+ST   + + +DP+  + + +  R    L   KM     S + +E A+ V I +++E   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQE-AKVVSIQNLIE---

Query:  -GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
            N TYCS  A II + N E PWY  CK+C ++V P +  +   C+ C +KN     +Y++K+ V DGE   +IT FEA + + GC V D ++
Subjt:  -GIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

KAG5574299.1 hypothetical protein H5410_054433 [Solanum commersonii]1.3e-2235.57Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGI--
        +TLWGD AEN+G  +E+   + P +   +V++ I++G   +ST   S +LI+P F  A DL A RE +    K   I P++ M+ A  V +  ++ G   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGI--

Query:  --DNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCNK-NVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
          ++  Y    A I ++ NK+ PWY  CK C ++V     + TA C+NCN  NV +  +Y L+L V +GE  A +  FEA K L+GC+V + ++
Subjt:  --DNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCNK-NVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

KAG5586050.1 hypothetical protein H5410_046484 [Solanum commersonii]8.5e-2234.36Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGI--
        +TL GD AEN+G  +E+   + P +   +V++ IY+G+  +ST     +LI+P F    DL A  E +    K   I P++ M+ A  V++ N+++G+  
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGI--

Query:  --DNVTYCSLIACIINVSNKENPWYEKCKICCQRV-YPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
          ++  Y    A I ++ NK+ PWY  CK C ++V +  D   TA C+NCN +NV +  +Y L+L V DGE  A +  FEA K ++GC + + ++
Subjt:  --DNVTYCSLIACIINVSNKENPWYEKCKICCQRV-YPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

TrEMBL top hitse value%identityAlignment
A0A1J6KWZ0 Rep_fac-A_C domain-containing protein4.6e-2133.33Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNL--IEGI
        +TLWG++AE +G  ++  +   P ++  NVK   Y G   +STT  S ++I+P+F  A  L     ++    K   + PSR ++ A+ V I ++   +  
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNL--IEGI

Query:  DNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCNKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQKL
        DN   TY      I  + NK++PWY  C  C ++V   D+  T  C  C  NV +  +Y+LKL + D +   +IT FEATK L+GCDV   ++ +
Subjt:  DNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCNKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQKL

A0A1S4BAI4 replication protein A 70 kDa DNA-binding subunit B-like4.6e-2134.67Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANIN----PSRRMQEAKVVSIQNL-I
        +TLW D +E +G  +++ +   P + A +V+   Y G  S+STT  S I+I+P F  A  L    +K  DY K  NI+    PS +++ A+ V I+++  
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANIN----PSRRMQEAKVVSIQNL-I

Query:  EGIDNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQKL
        +  DN   TY    A I ++ NK+ PWY  CK C ++V  +  +  A C +C  +NV +  +Y+LKL V D +   ++T FE+T+ L+GCDV+  +Q +
Subjt:  EGIDNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQKL

A0A314L4L3 Replication protein a 70 kDa dna-binding subunit b1.1e-1936.13Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIA-TNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEG-I
        LTLWGDLAE EG E+ E+++N+  ++A  + K   ++G+  LSTT  S +LI P F  A++L+   + +       ++ PSR MQ A+ V I ++I+G I
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIA-TNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEG-I

Query:  DNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSD
         N+   YC   A I ++++  +PWY  CK C +RV   +S  T  C  C  +++ +  +Y LK  VS  E    IT F+  +   GCDV +
Subjt:  DNV--TYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSD

M1DP79 Replication factor A3.4e-2437.31Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGIDN
        +TLWGD AEN+G  +E+   + P +   +V++ IY+G   +ST   S +LI+P F  A DL A RE +    K     PS+ M++A  V++ N+++G   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGIDN

Query:  VTYCSLI---ACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ
         T  +L    A I+++ N E PWY  CK C ++V      VT  C NCN +N  +  +Y L+L V D E  A +T F+A +ML+GC V D ++
Subjt:  VTYCSLI---ACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQ

M1DXI7 Replication protein A11.7e-2034.95Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGIDN
        +TLWGD AEN+G  +++   + P +   +V++ IY+G   +ST   S +LI+P F  A DL A RE +    K   + P++ M+ A  V + +++ G+  
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGIDN

Query:  VTYCSLI---ACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGC
         +  S+    A I+++ NK+ PWY  CK C ++V        A C+NCN  NV +  +Y L+L V  GE  A +  FEA   L+GC
Subjt:  VTYCSLI---ACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCN-KNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGC

SwissProt top hitse value%identityAlignment
Q10Q08 Replication protein A 70 kDa DNA-binding subunit B9.2e-1127.94Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINP--------------SRRMQEA
        ++LW DLA   G E+ + V + P I   ++K+  ++G +SLST   S I+++P+  +AE L A  +     T MA+I                S R+  +
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINP--------------SRRMQEA

Query:  KVVSIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAY-CSNCNKN-VTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCD
         + S  NL  G D   + SL A I  +   +  WY  CK C ++V   ++  + Y C  C KN      +Y++ + VSD   +A ++ F +  + ++GC 
Subjt:  KVVSIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAY-CSNCNKN-VTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCD

Query:  VSDM
          ++
Subjt:  VSDM

Q9SD82 Replication protein A 70 kDa DNA-binding subunit B4.6e-1027.86Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANI---------NPSRRMQEAKVV--
        ++LW DLA   G E+ +   N+P I   ++K+  ++G VSLST   S ++I+PN  +A  L +  +     T M+ I         N SR M   +V   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANI---------NPSRRMQEAKVV--

Query:  -SIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCDVSD
            N   G +   + S  A I  +   +  WY  CK C ++V     D   +C +C  K+     +Y++ + VSD   +  ++AF +  + +IGC   D
Subjt:  -SIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCDVSD

Query:  M
        +
Subjt:  M

Arabidopsis top hitse value%identityAlignment
AT5G08020.1 RPA70-kDa subunit B3.2e-1127.86Show/hide
Query:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANI---------NPSRRMQEAKVV--
        ++LW DLA   G E+ +   N+P I   ++K+  ++G VSLST   S ++I+PN  +A  L +  +     T M+ I         N SR M   +V   
Subjt:  LTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANI---------NPSRRMQEAKVV--

Query:  -SIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCDVSD
            N   G +   + S  A I  +   +  WY  CK C ++V     D   +C +C  K+     +Y++ + VSD   +  ++AF +  + +IGC   D
Subjt:  -SIQNLIEGIDNVTYCSLIACIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNC-NKNVTFIRKYMLKLLVSDGEMDAHITAF-EATKMLIGCDVSD

Query:  M
        +
Subjt:  M


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGACATTATGGGGTGATTTAGCAGAAAATGAAGGTCTAGAAGTGGAAGAAAATGTTAAAAATAATCCTACCATCATTGCAACCAATGTTAAAATTGAGATTTA
CGAAGGAGAAGTTAGTTTGTCAACAACTTTGACCAGTATTATTCTCATTGATCCAAACTTTTCGGATGCAGAGGACCTAGATGCTAGGAGAGAAAAGCTTCTTGATTATA
CAAAGATGGCCAACATCAACCCTTCAAGAAGAATGCAAGAAGCTAAAGTAGTTAGTATACAAAATTTAATTGAAGGAATTGATAATGTTACATACTGTTCGCTCATAGCA
TGTATTATCAATGTATCTAATAAAGAAAATCCATGGTATGAAAAATGCAAAATATGCTGTCAGAGAGTGTATCCAAATGATAGTGATGTGACAGCTTATTGTAGCAATTG
CAACAAAAATGTAACATTCATTAGAAAATATATGCTGAAACTTTTAGTTTCTGATGGAGAAATGGATGCACACATAACTGCTTTTGAGGCAACCAAAATGTTAATAGGAT
GTGACGTTTCTGATATGCTACAGAAATTATACAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTGACATTATGGGGTGATTTAGCAGAAAATGAAGGTCTAGAAGTGGAAGAAAATGTTAAAAATAATCCTACCATCATTGCAACCAATGTTAAAATTGAGATTTA
CGAAGGAGAAGTTAGTTTGTCAACAACTTTGACCAGTATTATTCTCATTGATCCAAACTTTTCGGATGCAGAGGACCTAGATGCTAGGAGAGAAAAGCTTCTTGATTATA
CAAAGATGGCCAACATCAACCCTTCAAGAAGAATGCAAGAAGCTAAAGTAGTTAGTATACAAAATTTAATTGAAGGAATTGATAATGTTACATACTGTTCGCTCATAGCA
TGTATTATCAATGTATCTAATAAAGAAAATCCATGGTATGAAAAATGCAAAATATGCTGTCAGAGAGTGTATCCAAATGATAGTGATGTGACAGCTTATTGTAGCAATTG
CAACAAAAATGTAACATTCATTAGAAAATATATGCTGAAACTTTTAGTTTCTGATGGAGAAATGGATGCACACATAACTGCTTTTGAGGCAACCAAAATGTTAATAGGAT
GTGACGTTTCTGATATGCTACAGAAATTATACAGGTAA
Protein sequenceShow/hide protein sequence
MKLTLWGDLAENEGLEVEENVKNNPTIIATNVKIEIYEGEVSLSTTLTSIILIDPNFSDAEDLDARREKLLDYTKMANINPSRRMQEAKVVSIQNLIEGIDNVTYCSLIA
CIINVSNKENPWYEKCKICCQRVYPNDSDVTAYCSNCNKNVTFIRKYMLKLLVSDGEMDAHITAFEATKMLIGCDVSDMLQKLYR