CuGenDBv2

Gene ID	Moc07g03760
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	chr7:3264523..3265206
RNA-Seq Expression	Moc07g03760
Synteny	Moc07g03760
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.2e-43

51.41

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++TE+V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.1e-44

51.98

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     KE +  +     +    TW +NDGLLTSWLLG++TE+V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

3.5e-43

50.85

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++T++V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

RVX14187.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.2e-43

50.85

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++TE+V+ +++ ++TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LA ++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]

1.1e-55

61.02

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  L++Q+FHQC+SLIS+KLN++NY+LWKSQVLPL+R+LG+E+HL ++ P   E   K+  +       TW+NNDGLLTSWLLGII EDVL+++E  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
         +VW SLEE LL ++KENEIH+NE +L L+KG+L++D+Y++KFK+LCD+L AMKKP+DDL KVFHLARGL  KYK F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

TrEMBL top hits

e value

%identity

Alignment

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE1

5.8e-44

51.41

Show/hide

Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++TE+V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-44

51.98

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     KE +  +     +    TW +NDGLLTSWLLG++TE+V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE1

1.7e-43

50.85

Show/hide

Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++T++V+ +++  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LAA++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

A0A438JZ09 Retrovirus-related Pol polyprotein from transposon RE1

5.8e-44

50.85

Show/hide

Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  LSIQ FHQC+SL+SIKLN +N +LW+SQVLPLVRSLG+ +HL++     +E +  +     +    TW +NDGLLTSWLLG++TE+V+ +++ ++TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
        Y VW SL E+LL ++KE E+ +   +  ++KGT +LD+YL++FK +CD LA ++KPV DL KVF LA+GL  KY  F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

A0A6J1DMG5 uncharacterized protein LOC111021379

5.1e-56

61.02

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Query:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA
        E  L++Q+FHQC+SLIS+KLN++NY+LWKSQVLPL+R+LG+E+HL ++ P   E   K+  +       TW+NNDGLLTSWLLGII EDVL+++E  +TA
Subjt:  ETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTA

Query:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF
         +VW SLEE LL ++KENEIH+NE +L L+KG+L++D+Y++KFK+LCD+L AMKKP+DDL KVFHLARGL  KYK F
Subjt:  YKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYKAF

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.1e-10

28.12

Show/hide

Query:  KLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTAYKVWISLEEQLLIISKEN
        KL + NY++W  QV  L     +   L          +  D     NP Y  W   D L+ S +LG I+  V   + +  TA ++W +L +   I +  +
Subjt:  KLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTAYKVWISLEEQLLIISKEN

Query:  EIHINEFILRLR---KGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYK
          H+ +   +L+   KGT T+DDY++   +  D+LA + KP+D   +V  +   L  +YK
Subjt:  EIHINEFILRLR---KGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKYK

Arabidopsis top hits

e value

%identity

Alignment

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.6e-12

31.1

Show/hide

Query:  ISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPL-YNTWLNNDGLLTSWLLGIITEDVLSMIEKVD-TAYKVWISLEEQLLI
        +++ LN  NY +W+     L  S G+  H+             D ++   P+    W   DGL+  W+ G IT+ +L  I KV  TA  +W+SLE    +
Subjt:  ISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDDNTFSNPL-YNTWLNNDGLLTSWLLGIITEDVLSMIEKVD-TAYKVWISLEEQLLI

Query:  ISKENEIHINEFILRLRKGT---LTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKY
             E    +F   LR  T   L++ +Y +K KSL D L  +  P+ D   V HL  GL  KY
Subjt:  ISKENEIHINEFILRLRKGT---LTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGLDNKY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGGAAAAGTACAAAAATGAGAATTACTCTTTGAGTGACAAATCCAAAATTTCTTTATGGTATCAGAGCTTGTCTGAACAAAAACTAAAGTCAAATATCATCGATTC
TGGTGTTGTCCTTAATTTTCTTCTCATGATCACTAAACTTGAAACTACACTCAGTATACAAACCTTTCATCAGTGTACAAGTTTGATATCTATCAAACTTAATGCAGCGA
ACTATGTGCTTTGGAAATCTCAAGTTCTTCCATTGGTTCGGAGTCTTGGAATAGAAAATCACTTGACAGATCAAGAACCTCAAGAAAAAGAACTAGTTGATAAAGATGAC
AATACTTTTTCAAATCCCCTTTACAACACATGGCTCAATAATGATGGGTTGCTCACCTCATGGTTGTTGGGAATCATCACTGAGGACGTGTTGTCTATGATTGAAAAAGT
TGATACTGCATACAAGGTTTGGATCTCCCTAGAGGAACAACTTCTCATCATTTCAAAAGAAAATGAGATTCATATTAATGAATTCATTCTTCGGCTAAGGAAAGGTACGC
TGACTCTTGATGATTATTTAAAGAAGTTTAAGTCTCTTTGTGACAAATTAGCAGCTATGAAGAAACCTGTGGATGACTTACGCAAAGTATTCCACCTAGCTAGAGGATTG
GACAACAAATATAAAGCCTTTTAG

mRNA sequence

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Protein sequence

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MLEKYKNENYSLSDKSKISLWYQSLSEQKLKSNIIDSGVVLNFLLMITKLETTLSIQTFHQCTSLISIKLNAANYVLWKSQVLPLVRSLGIENHLTDQEPQEKELVDKDD
NTFSNPLYNTWLNNDGLLTSWLLGIITEDVLSMIEKVDTAYKVWISLEEQLLIISKENEIHINEFILRLRKGTLTLDDYLKKFKSLCDKLAAMKKPVDDLRKVFHLARGL
DNKYKAF

Moc07g03760 (gene) of Bitter gourd (OHB3-1) v2 genome