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Moc07g03980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g03980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr7:3473061..3473503
RNA-Seq ExpressionMoc07g03980
SyntenyMoc07g03980
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7129749.1 hypothetical protein RHSIM_Rhsim10G0081500 [Rhododendron simsii]1.2e-0946.34Show/hide
Query:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSSSTTVEKWIDGKREQLSEVVNMLSVSSPN
        V +VPD R NLISTGKLD+EGY   F  G WKL +GS VVA G+K   +Y   S   + K  D   E  S++V++  + SP+
Subjt:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSSSTTVEKWIDGKREQLSEVVNMLSVSSPN
KAF7129820.1 hypothetical protein RHSIM_Rhsim10G0014000 [Rhododendron simsii]6.5e-0860Show/hide
Query:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        V +VPD R NLISTGKLD+EGY + F  G WKL +GS VVA G+K   +Y
Subjt:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
KAG5549867.1 hypothetical protein RHGRI_014986 [Rhododendron griersonianum]3.8e-0859.62Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        E V +VPD R NLISTGKLD+EGY + F  G WKL +GS VVA G K   +Y
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina]6.5e-0859.62Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        +GV +VPD R NLISTGKLD+EG+ S F  G WKL RGS V+A G K +  Y
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
VVB04180.1 unnamed protein product [Arabis nemorensis]5.0e-0859.62Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        +GV +VPD R NLISTGKLD+EG+ S F  G WKL RGS V+A G K +  Y
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
TrEMBL top hitse value%identityAlignment
A0A087GQF6 Uncharacterized protein3.1e-0859.62Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        +GV +VPD R NLISTGKLD+EG+ S F  G WKL RGS V+A G K +  Y
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
A0A2I0IXZ9 Integrase catalytic domain-containing protein5.4e-0858Show/hide
Query:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        V +VP+ R NLISTG+LD+EGYG+EF+ G WKL +GS +VA G K   +Y
Subjt:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
A0A2I0JK44 Integrase catalytic domain-containing protein5.4e-0852.94Show/hide
Query:  GVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        GV ++PD +RNLIS G+LD+EGY   F   SWK+++G+ VVA G KE  +Y
Subjt:  GVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
A0A565BS43 Uncharacterized protein2.4e-0859.62Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
        +GV +VPD R NLISTGKLD+EG+ S F  G WKL RGS V+A G K +  Y
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMY
A0A565CBH1 CCHC-type domain-containing protein4.1e-0848.81Show/hide
Query:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSSSTTVEKWIDGKR-EQL--SEVVNMLSVS
        +GV +VPD R NLI TGKLD+EG+ S F  G WKL RGS V+A G K +  Y          W+  KR E L  SEVV   SV+
Subjt:  EGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSSSTTVEKWIDGKR-EQL--SEVVNMLSVS
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-0644.44Show/hide
Query:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSS
        V +VPD R NLIS   LD +GY S FA   W+L +GS V+A G     +Y +++
Subjt:  VTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTGGAATTGCTCAAGGGACGCTGGGCCGAGGGTGTCACATATGTACCCGATTTTAGGAGGAATCTAATATCTACTGGGAAGTTGGATGAAGAGGGTTAC
GGTAGTGAGTTTGCATATGGTAGCTGGAAGCTAGTAAGGGGATCCAAGGTAGTGGCAATGGGCCACAAAGAAGCTTTAATGTATGAGTCTAGTTCAAGTACAACA
GTTGAGAAGTGGATAGATGGGAAAAGGGAACAACTCAGTGAGGTGGTCAACATGTTATCAGTTTCAAGCCCCAATTGTCAGACGATTTGGGAGCTGATGAAAGTC
ACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTGGAATTGCTCAAGGGACGCTGGGCCGAGGGTGTCACATATGTACCCGATTTTAGGAGGAATCTAATATCTACTGGGAAGTTGGATGAAGAGGGTTAC
GGTAGTGAGTTTGCATATGGTAGCTGGAAGCTAGTAAGGGGATCCAAGGTAGTGGCAATGGGCCACAAAGAAGCTTTAATGTATGAGTCTAGTTCAAGTACAACA
GTTGAGAAGTGGATAGATGGGAAAAGGGAACAACTCAGTGAGGTGGTCAACATGTTATCAGTTTCAAGCCCCAATTGTCAGACGATTTGGGAGCTGATGAAAGTC
ACGTAA
Protein sequenceShow/hide protein sequence
MKLELLKGRWAEGVTYVPDFRRNLISTGKLDEEGYGSEFAYGSWKLVRGSKVVAMGHKEALMYESSSSTTVEKWIDGKREQLSEVVNMLSVSSPNCQTIWELMKV
T