CuGenDBv2

Gene ID	Moc07g04210
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Genome location	chr7:3674469..3677805
RNA-Seq Expression	Moc07g04210
Synteny	Moc07g04210
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.4e-26

48.33

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Query:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIID
        PP +NSWKLNT+AAW+ D +TGG+G IL ++KGE++ A C + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHRQ Q+ TEI W+++
Subjt:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIID

Query:  DIRNMEDEVRLITTNTLRRQ
        +I  M  ++ +++   + R+
Subjt:  DIRNMEDEVRLITTNTLRRQ

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]

8.0e-19

49.54

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Query:  PTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIIDDI
        P N WKLNTDAAW  ++  GGLG I+ N+K EI  AG +   D R ITYLEL+AI  G+ AV    S  L +ES+ LEA+ L+    QN+TEI W++ DI
Subjt:  PTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIIDDI

Query:  RNMEDEVRL
        +N  +  RL
Subjt:  RNMEDEVRL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]

2.9e-21

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Query:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ
        R+     R    PP +NSWKLNTDAAW+ D +T G+G IL ++KGE++  GC + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHR 
Subjt:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ

Query:  MQ
        ++
Subjt:  MQ

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]

2.9e-21

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Query:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ
        R+     R    PP +NSWKLNTDAAW+ D +T G+G IL ++KGE++  GC + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHR 
Subjt:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ

Query:  MQ
        ++
Subjt:  MQ

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

1.5e-25

46.09

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Query:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVR--------GKFSGPLHLESDLLEAVLLLHRQMQNI
        PP +NSWKLNTDAAW+ D +TGG+G IL ++KGE++ A C + + +R ITYLE++AI +GL A+R         +   P+HLESD LEA+ LLHRQ Q+ 
Subjt:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVR--------GKFSGPLHLESDLLEAVLLLHRQMQNI

Query:  TEIRWIIDDIRNMEDEVRLITTNTLRRQ
        TEI W++++I  M +++++++   + R+
Subjt:  TEIRWIIDDIRNMEDEVRLITTNTLRRQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

6.6e-27

48.33

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Query:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIID
        PP +NSWKLNT+AAW+ D +TGG+G IL ++KGE++ A C + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHRQ Q+ TEI W+++
Subjt:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIID

Query:  DIRNMEDEVRLITTNTLRRQ
        +I  M  ++ +++   + R+
Subjt:  DIRNMEDEVRLITTNTLRRQ

A0A6J1D5W1 uncharacterized protein LOC111017329

3.9e-19

49.54

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Query:  PTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIIDDI
        P N WKLNTDAAW  ++  GGLG I+ N+K EI  AG +   D R ITYLEL+AI  G+ AV    S  L +ES+ LEA+ L+    QN+TEI W++ DI
Subjt:  PTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIIDDI

Query:  RNMEDEVRL
        +N  +  RL
Subjt:  RNMEDEVRL

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X1

1.4e-21

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Query:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ
        R+     R    PP +NSWKLNTDAAW+ D +T G+G IL ++KGE++  GC + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHR 
Subjt:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ

Query:  MQ
        ++
Subjt:  MQ

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X2

1.4e-21

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Query:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ
        R+     R    PP +NSWKLNTDAAW+ D +T G+G IL ++KGE++  GC + + +R ITYLE++AI +GL A+R +   P+HLESD LEA+ LLHR 
Subjt:  RKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQ

Query:  MQ
        ++
Subjt:  MQ

A0A6J1DSV1 uncharacterized protein LOC111023608

7.3e-26

46.09

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Query:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVR--------GKFSGPLHLESDLLEAVLLLHRQMQNI
        PP +NSWKLNTDAAW+ D +TGG+G IL ++KGE++ A C + + +R ITYLE++AI +GL A+R         +   P+HLESD LEA+ LLHRQ Q+ 
Subjt:  PPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLAILKGLTAVR--------GKFSGPLHLESDLLEAVLLLHRQMQNI

Query:  TEIRWIIDDIRNMEDEVRLITTNTLRRQ
        TEI W++++I  M +++++++   + R+
Subjt:  TEIRWIIDDIRNMEDEVRLITTNTLRRQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

5.4e-05

30.69

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Query:  NREEIIQHV---LWECKIRETGNFEYQSGSDSRKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLA
        N +E+++     L E +IR     E +S     + +R   G   PPP    K NTDA W  D +  G+G +L N+KGE+   G       + +   EL A
Subjt:  NREEIIQHV---LWECKIRETGNFEYQSGSDSRKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLAGCELTKDDRGITYLELLA

Query:  I
        +
Subjt:  I

Sequences

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CDS sequence

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ATGGGACCGATTGACAGACTGGTGGCAGACAAAAGTATTGACGTAGAGGACGATTGCGACGATCTGAAGATCGATCAGCGTCGCGACGACAGAAATAGAGAAGAAATCAT
CCAACATGTCCTTTGGGAATGCAAGATAAGGGAGACAGGAAATTTTGAGTACCAATCTGGTAGCGATAGTAGGAAATTTGATAGACGCCCACGAGGGGCTTCGAATCCTC
CTCCAACAAACAGCTGGAAACTAAATACTGATGCGGCTTGGAAGGTGGACAGAGACACCGGCGGTCTGGGATTGATTCTCACAAATGATAAAGGAGAAATACTGCTAGCA
GGATGTGAATTAACCAAGGACGATAGAGGGATTACTTACCTCGAACTTTTGGCAATTCTCAAGGGGCTCACAGCCGTTCGAGGAAAATTTTCAGGACCACTTCACTTGGA
ATCCGACTTGCTGGAGGCAGTTCTTCTGCTTCACAGACAGATGCAAAACATCACCGAAATTAGGTGGATTATTGACGACATTCGAAATATGGAAGATGAAGTGCGGCTGA
TTACAACAAACACATTAAGAAGGCAACTCATGGTCCGCCCAAGTGTTCAGGTCGGTCTGGAGGCCGAGTTCGAGCTGCAATCTGGAACACACTGTTGTGCATATCCTTGC
ATAAACATTTGGCGCCGTGTGGGAACGACAATCTAA

mRNA sequence

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Protein sequence

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MGPIDRLVADKSIDVEDDCDDLKIDQRRDDRNREEIIQHVLWECKIRETGNFEYQSGSDSRKFDRRPRGASNPPPTNSWKLNTDAAWKVDRDTGGLGLILTNDKGEILLA
GCELTKDDRGITYLELLAILKGLTAVRGKFSGPLHLESDLLEAVLLLHRQMQNITEIRWIIDDIRNMEDEVRLITTNTLRRQLMVRPSVQVGLEAEFELQSGTHCCAYPC
INIWRRVGTTI

Moc07g04210 (gene) of Bitter gourd (OHB3-1) v2 genome