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Moc07g04280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g04280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionrRNA N-glycosidase
Genome locationchr7:3703892..3705087
RNA-Seq ExpressionMoc07g04280
SyntenyMoc07g04280
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
InterPro domainsIPR016138 - Ribosome-inactivating protein, subdomain 1
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156706.1 ribosome-inactivating protein bryodin I-like, partial [Momordica charantia]1.6e-0933.93Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIAL-RDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAF
        L I  I   + TVEG     ++T    SY + LN FR  L  +NKK +NI LLRA VA   R+  I +   +   I  AID+ NVY+L +Y  +P C+  
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIAL-RDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAF

Query:  HYFSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKY
        H+F+DPV+                               NR  L LGL SL++ +P L  Y+   T Y
Subjt:  HYFSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKY

XP_022158190.1 ribosome-inactivating protein bryodin I-like [Momordica charantia]3.7e-0632.93Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSAFH
        L++F+  AP  TVEG     ++     SY + LN +R  L   + VF+I LL  NV    R+  I +  S N TI  AID+ NVYVL +YT    C+  H
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSAFH

Query:  YFSDPVARL----------------------------NRCCLELGLKSLDHL-LPALYEYSYTGTKY
        +F+D VA                               R  L+LGL  L+++ +P LY Y+  G  Y
Subjt:  YFSDPVARL----------------------------NRCCLELGLKSLDHL-LPALYEYSYTGTKY

XP_022158196.1 putative ribosome-inactivating protein, partial [Momordica charantia]1.2e-1247.27Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPL--LRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSA
        L+I ++ AP +T EGQR IT  TTNI++Y S LN FR A+R   K F+  L  LR  V+   R+ EI++  S  + +  AID+VNVYVL Y+T NPSC  
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPL--LRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSA

Query:  FHYFSDPVAR
         ++F+D  AR
Subjt:  FHYFSDPVAR

XP_022158438.1 ribosome-inactivating protein cucurmosin-like [Momordica charantia]1.1e-5069.23Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIASTNITIGQAIDLVNVYVLEYYTPNPSCSAFHY
        L+IF+  APTYTV+GQRRITI+TTNIDSYVSSLNTFRIALRDNKKV NIPLLRANV D  RFIEISIASTNITIG AIDLVNVYVL YYTPNPSCSA+HY
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIASTNITIGQAIDLVNVYVLEYYTPNPSCSAFHY

Query:  FSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKYVQT
        FSDPVA                               NR  L+LGL SL+HLLPALYEY  TGTKY+QT
Subjt:  FSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKYVQT

XP_022158442.1 ribosome-inactivating protein momordin I-like [Momordica charantia]1.1e-0535.19Show/hide
Query:  IEISIASTN-ITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPVAR-----------------------------LNRCCLELGLKSLDHLLPALYEYSY
        +EIS+ ++N +T+  AID++NVYVL YYTP+P+CS  ++F DPVA                               +R    LGL +L  L+ ALYEY  
Subjt:  IEISIASTN-ITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPVAR-----------------------------LNRCCLELGLKSLDHLLPALYEYSY

Query:  TGTKYVQT
          + Y  T
Subjt:  TGTKYVQT

TrEMBL top hitse value%identityAlignment
A0A6J1DV53 rRNA N-glycosidase1.8e-0632.93Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSAFH
        L++F+  AP  TVEG     ++     SY + LN +R  L   + VF+I LL  NV    R+  I +  S N TI  AID+ NVYVL +YT    C+  H
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSAFH

Query:  YFSDPVARL----------------------------NRCCLELGLKSLDHL-LPALYEYSYTGTKY
        +F+D VA                               R  L+LGL  L+++ +P LY Y+  G  Y
Subjt:  YFSDPVARL----------------------------NRCCLELGLKSLDHL-LPALYEYSYTGTKY

A0A6J1DVR9 rRNA N-glycosidase7.8e-1033.93Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIAL-RDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAF
        L I  I   + TVEG     ++T    SY + LN FR  L  +NKK +NI LLRA VA   R+  I +   +   I  AID+ NVY+L +Y  +P C+  
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIAL-RDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAF

Query:  HYFSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKY
        H+F+DPV+                               NR  L LGL SL++ +P L  Y+   T Y
Subjt:  HYFSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKY

A0A6J1DW33 rRNA N-glycosidase5.4e-5169.23Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIASTNITIGQAIDLVNVYVLEYYTPNPSCSAFHY
        L+IF+  APTYTV+GQRRITI+TTNIDSYVSSLNTFRIALRDNKKV NIPLLRANV D  RFIEISIASTNITIG AIDLVNVYVL YYTPNPSCSA+HY
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIASTNITIGQAIDLVNVYVLEYYTPNPSCSAFHY

Query:  FSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKYVQT
        FSDPVA                               NR  L+LGL SL+HLLPALYEY  TGTKY+QT
Subjt:  FSDPVA-----------------------------RLNRCCLELGLKSLDHLLPALYEYSYTGTKYVQT

A0A6J1DX83 rRNA N-glycosidase5.3e-0635.19Show/hide
Query:  IEISIASTN-ITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPVAR-----------------------------LNRCCLELGLKSLDHLLPALYEYSY
        +EIS+ ++N +T+  AID++NVYVL YYTP+P+CS  ++F DPVA                               +R    LGL +L  L+ ALYEY  
Subjt:  IEISIASTN-ITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPVAR-----------------------------LNRCCLELGLKSLDHLLPALYEYSY

Query:  TGTKYVQT
          + Y  T
Subjt:  TGTKYVQT

A0A6J1E098 rRNA N-glycosidase5.8e-1347.27Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPL--LRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSA
        L+I ++ AP +T EGQR IT  TTNI++Y S LN FR A+R   K F+  L  LR  V+   R+ EI++  S  + +  AID+VNVYVL Y+T NPSC  
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPL--LRANVADPERFIEISIA-STNITIGQAIDLVNVYVLEYYTPNPSCSA

Query:  FHYFSDPVAR
         ++F+D  AR
Subjt:  FHYFSDPVAR

SwissProt top hitse value%identityAlignment
P24817 Ribosome-inactivating protein beta-momorcharin1.1e-0535.71Show/hide
Query:  TVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPS
        T +G     ++T    +Y   +  FR  L  + KV++IPLL + ++D  RFI +++ S    TI  AID+ NVYV+ Y T + S
Subjt:  TVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPS

P29339 Ribosome-inactivating protein momordin II1.5e-0535.71Show/hide
Query:  TVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPS
        T +G     ++T    +Y   +  FR  L  + KV++IPLL + ++D  RFI + + S    TI  AID+ NVYV+ Y T + S
Subjt:  TVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPS

P33185 Ribosome-inactivating protein bryodin I6.2e-0432.58Show/hide
Query:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEY
        L I  I   + TVEG     ++     SY   +   R AL   +KV+NIPLLR++++   R+  + + +  + TI  A+D+ NVY++ Y
Subjt:  LSIFIIDAPTYTVEGQRRITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEY

P84531 Ribosome-inactivating protein cucurmosin3.6e-0427.5Show/hide
Query:  RITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPV-----------
        R  +++    SY + +   R AL  + KV++IP+L + V D  RFI I + +    +I  AID++NVY++ Y T   S     YF   V           
Subjt:  RITITTTNIDSYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIAS-TNITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPV-----------

Query:  ------------------ARLNRCCLELGLKSLDHLLPALYEYSYTGTK-----YVQTTS
                          A+  R  +ELGL +LD  +  L+ Y+           +QTTS
Subjt:  ------------------ARLNRCCLELGLKSLDHLLPALYEYSYTGTK-----YVQTTS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTACGTCCAATTCTCTGCTACCGTTGCAGGTTCTACTAAAATGTCAGAAAGAATCTTCCAAGAGTTTACAAGCCCCTTATAATGATTTCTCTCAGTTTTCCCT
CACACAGAAAACGCTCACGAATTACTCTATAAGCCTTTCAAACTCTCGGACAGATACACAAGTATTTAGCTCTCAAATTCTCTCTTCTTGGAGAATTTCTCACGACTCTC
TATTTGTGCACACCAATCAAATGGCCCATCTATCTATATTTATAATAGATGCTCCTACGTATACTGTTGAGGGGCAGCGCAGAATCACCATCACAACTACCAATATCGAC
TCCTATGTATCTTCCCTCAATACTTTCAGAATCGCTTTACGAGACAATAAGAAAGTGTTCAACATACCTCTACTGCGCGCCAATGTTGCAGATCCAGAACGCTTCATAGA
AATCAGTATTGCAAGTACCAATATCACCATTGGCCAGGCTATAGATCTAGTAAACGTTTATGTTCTGGAGTATTACACCCCAAACCCAAGCTGTTCTGCATTCCACTATT
TTAGTGACCCAGTTGCTCGTCTGAACCGCTGCTGTCTCGAACTTGGGCTCAAAAGCCTCGACCATCTGCTTCCAGCGCTGTACGAGTACAGCTACACCGGCACCAAATAC
GTTCAAACGACATCTCACAGGCGCTCGTGGTGGCCGTTTAGGTTGTTTCTGAGGCTGCGAGATTCAGAAAGATTCCGATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTACGTCCAATTCTCTGCTACCGTTGCAGGTTCTACTAAAATGTCAGAAAGAATCTTCCAAGAGTTTACAAGCCCCTTATAATGATTTCTCTCAGTTTTCCCT
CACACAGAAAACGCTCACGAATTACTCTATAAGCCTTTCAAACTCTCGGACAGATACACAAGTATTTAGCTCTCAAATTCTCTCTTCTTGGAGAATTTCTCACGACTCTC
TATTTGTGCACACCAATCAAATGGCCCATCTATCTATATTTATAATAGATGCTCCTACGTATACTGTTGAGGGGCAGCGCAGAATCACCATCACAACTACCAATATCGAC
TCCTATGTATCTTCCCTCAATACTTTCAGAATCGCTTTACGAGACAATAAGAAAGTGTTCAACATACCTCTACTGCGCGCCAATGTTGCAGATCCAGAACGCTTCATAGA
AATCAGTATTGCAAGTACCAATATCACCATTGGCCAGGCTATAGATCTAGTAAACGTTTATGTTCTGGAGTATTACACCCCAAACCCAAGCTGTTCTGCATTCCACTATT
TTAGTGACCCAGTTGCTCGTCTGAACCGCTGCTGTCTCGAACTTGGGCTCAAAAGCCTCGACCATCTGCTTCCAGCGCTGTACGAGTACAGCTACACCGGCACCAAATAC
GTTCAAACGACATCTCACAGGCGCTCGTGGTGGCCGTTTAGGTTGTTTCTGAGGCTGCGAGATTCAGAAAGATTCCGATTGTAG
Protein sequenceShow/hide protein sequence
MWATSNSLLPLQVLLKCQKESSKSLQAPYNDFSQFSLTQKTLTNYSISLSNSRTDTQVFSSQILSSWRISHDSLFVHTNQMAHLSIFIIDAPTYTVEGQRRITITTTNID
SYVSSLNTFRIALRDNKKVFNIPLLRANVADPERFIEISIASTNITIGQAIDLVNVYVLEYYTPNPSCSAFHYFSDPVARLNRCCLELGLKSLDHLLPALYEYSYTGTKY
VQTTSHRRSWWPFRLFLRLRDSERFRL