; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g04290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g04290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr7:3705585..3711669
RNA-Seq ExpressionMoc07g04290
SyntenyMoc07g04290
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN60106.1 hypothetical protein VITISV_028182 [Vitis vinifera]7.2e-5255.24Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----
        EKLK+ D+RD  L EEI R+D+G  S SG+ LN++ RGR N+R+ N  R  SRN   NRSKSR+  +++CWNC K GH +R CK+PKK    ++      
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----

Query:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS
        E+  AL+LAV+   D WV+DSGASFHTT  R+I++NYVAG+ GKVYLADG  LD++G+GDV + + NGSVW + KVR + ++ +NLISVGQLDNEG EI 
Subjt:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS

Query:  FGQGNWKVTK
        F  G WKVTK
Subjt:  FGQGNWKVTK

PON60333.1 Zinc finger, CCHC-type [Parasponia andersonii]3.3e-5753.98Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRG----KSRNNRSKSRNS-RLECWNCCKIGHLRRNCKAPKKAEGKE-----AGE
        EKL+F DVRD  L EE+ R DSG  ++S + LN+     +S  N  RG    KSRN R+KSR+  R+ECWNC K GH+++NC+AP+K + +        E
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRG----KSRNNRSKSRNS-RLECWNCCKIGHLRRNCKAPKKAEGKE-----AGE

Query:  IHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISF
        +  AL+L+V+   D+WV+DSGASFHTT  RD+LENY+AGN+GKVYLADGEPLDI+G+GD+ LKM+NGSVWKI+KVR V  +M+NLISVGQLD EG  ++F
Subjt:  IHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISF

Query:  GQGNWKVTK-LKTELDGSTKNTQYIS
          G+WKV+K       G+   T YI+
Subjt:  GQGNWKVTK-LKTELDGSTKNTQYIS

PON63051.1 Zinc finger, CCHC-type [Trema orientale]6.9e-5555.29Show/hide
Query:  KLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGK----RGKSRNNRSKSRNSRL-ECWNCCKIGHLRRNCKAPKKAEGKE-----AGEI
        KL+F DVRD  L EE+ R DSG  ++S + LN++    +S  N      R KSRN R KSR+ R  ECWNC K GH+++NC+AP+K + +        E+
Subjt:  KLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGK----RGKSRNNRSKSRNSRL-ECWNCCKIGHLRRNCKAPKKAEGKE-----AGEI

Query:  HAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFG
          AL+L+V+   D+WV+DSGASFHTT  R++LENYVAGN+GKVYLADGEPLDI+G+GD+ LKM+NGSVWKI+KVR V  +M+NL+SVGQLD EG  ++F 
Subjt:  HAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFG

Query:  QGNWKVTK
         G+WKV+K
Subjt:  QGNWKVTK

RVW80348.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-5154.76Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----
        EKLK+ D+RD  L EEIHR+D+G  S SG+ LN++ RGR N+R+ N  R  SRN   NRSKSR+  +++CWNC K GH +R CK+PKK    ++      
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----

Query:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS
        E+  AL+LAV+   D WV+DSGASFHTT  R+I++NYVAG+ GKVYLADG  LD++G+GDV + + NGSVW + KVR + ++ +NLISVGQLD+EG  I 
Subjt:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS

Query:  FGQGNWKVTK
        F  G WKVTK
Subjt:  FGQGNWKVTK

XP_022152845.1 uncharacterized protein LOC111020469 [Momordica charantia]8.2e-6464.71Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----EIHAAL
        EKLKF DVRDAAL EEI RKDSGIA TSG+ LNVDRGRNN+R  G RGKS+NNRS+SRNSR ECWNC KIGHL+ NCKAPKK EG EA      +IH AL
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----EIHAAL

Query:  VLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFGQGNW
        V+AVE AHDTWV+DS                  GNHGKVYLADGEPLDIIGIG+VNLKM NGSVWKIRK                LDNEGCEISFGQGNW
Subjt:  VLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFGQGNW

Query:  KVTK-LKTELDGSTKNTQYIS
        KVTK       GS   T Y++
Subjt:  KVTK-LKTELDGSTKNTQYIS

TrEMBL top hitse value%identityAlignment
A0A2P5CH01 Zinc finger, CCHC-type1.6e-5753.98Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRG----KSRNNRSKSRNS-RLECWNCCKIGHLRRNCKAPKKAEGKE-----AGE
        EKL+F DVRD  L EE+ R DSG  ++S + LN+     +S  N  RG    KSRN R+KSR+  R+ECWNC K GH+++NC+AP+K + +        E
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRG----KSRNNRSKSRNS-RLECWNCCKIGHLRRNCKAPKKAEGKE-----AGE

Query:  IHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISF
        +  AL+L+V+   D+WV+DSGASFHTT  RD+LENY+AGN+GKVYLADGEPLDI+G+GD+ LKM+NGSVWKI+KVR V  +M+NLISVGQLD EG  ++F
Subjt:  IHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISF

Query:  GQGNWKVTK-LKTELDGSTKNTQYIS
          G+WKV+K       G+   T YI+
Subjt:  GQGNWKVTK-LKTELDGSTKNTQYIS

A0A2P5CPV0 Zinc finger, CCHC-type3.4e-5555.29Show/hide
Query:  KLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGK----RGKSRNNRSKSRNSRL-ECWNCCKIGHLRRNCKAPKKAEGKE-----AGEI
        KL+F DVRD  L EE+ R DSG  ++S + LN++    +S  N      R KSRN R KSR+ R  ECWNC K GH+++NC+AP+K + +        E+
Subjt:  KLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGK----RGKSRNNRSKSRNSRL-ECWNCCKIGHLRRNCKAPKKAEGKE-----AGEI

Query:  HAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFG
          AL+L+V+   D+WV+DSGASFHTT  R++LENYVAGN+GKVYLADGEPLDI+G+GD+ LKM+NGSVWKI+KVR V  +M+NL+SVGQLD EG  ++F 
Subjt:  HAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFG

Query:  QGNWKVTK
         G+WKV+K
Subjt:  QGNWKVTK

A0A438H767 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-5254.76Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----
        EKLK+ D+RD  L EEIHR+D+G  S SG+ LN++ RGR N+R+ N  R  SRN   NRSKSR+  +++CWNC K GH +R CK+PKK    ++      
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----

Query:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS
        E+  AL+LAV+   D WV+DSGASFHTT  R+I++NYVAG+ GKVYLADG  LD++G+GDV + + NGSVW + KVR + ++ +NLISVGQLD+EG  I 
Subjt:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS

Query:  FGQGNWKVTK
        F  G WKVTK
Subjt:  FGQGNWKVTK

A0A6J1DF43 uncharacterized protein LOC1110204694.0e-6464.71Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----EIHAAL
        EKLKF DVRDAAL EEI RKDSGIA TSG+ LNVDRGRNN+R  G RGKS+NNRS+SRNSR ECWNC KIGHL+ NCKAPKK EG EA      +IH AL
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----EIHAAL

Query:  VLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFGQGNW
        V+AVE AHDTWV+DS                  GNHGKVYLADGEPLDIIGIG+VNLKM NGSVWKIRK                LDNEGCEISFGQGNW
Subjt:  VLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEISFGQGNW

Query:  KVTK-LKTELDGSTKNTQYIS
        KVTK       GS   T Y++
Subjt:  KVTK-LKTELDGSTKNTQYIS

A5ADV4 CCHC-type domain-containing protein3.5e-5255.24Show/hide
Query:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----
        EKLK+ D+RD  L EEI R+D+G  S SG+ LN++ RGR N+R+ N  R  SRN   NRSKSR+  +++CWNC K GH +R CK+PKK    ++      
Subjt:  EKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVD-RGRNNSRD-NGKRGKSRN---NRSKSRN-SRLECWNCCKIGHLRRNCKAPKKAEGKEAG-----

Query:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS
        E+  AL+LAV+   D WV+DSGASFHTT  R+I++NYVAG+ GKVYLADG  LD++G+GDV + + NGSVW + KVR + ++ +NLISVGQLDNEG EI 
Subjt:  EIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDNEGCEIS

Query:  FGQGNWKVTK
        F  G WKVTK
Subjt:  FGQGNWKVTK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-2033.88Show/hide
Query:  LKFADVRDAALGEEIHRK---DSGIA-STSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAGEIH----AA
        ++  DV  A L  E  RK   + G A  T G   +  R  NN   +G RGKS+ NRSKSR     C+NC + GH +R+C  P+K +G+ +G+ +    AA
Subjt:  LKFADVRDAALGEEIHRK---DSGIA-STSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHLRRNCKAPKKAEGKEAGEIH----AA

Query:  LV----------------LAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISV
        +V                + + G    WVVD+ AS H T  RD+   YVAG+ G V + +     I GIGD+ +K   G    ++ VR V ++  NLIS 
Subjt:  LV----------------LAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISV

Query:  GQLDNEGCEISFGQGNWKVTKLKTEL-DGSTKNTQYISPLEV
          LD +G E  F    W++TK    +  G  + T Y +  E+
Subjt:  GQLDNEGCEISFGQGNWKVTKLKTEL-DGSTKNTQYISPLEV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAAGCGGACAATATCATACCATTGTGGAGATACGTGGGGTACCGTTGTCCTCAACAAGTGTTGGGAGCCTATGAAGGCAGCTATTTCAAATTCTTGTGGAAAAC
AGAAAAATTGAAATTCGCAGATGTCAGAGATGCAGCTCTTGGAGAGGAGATTCACAGAAAAGATTCTGGTATTGCGTCTACTTCTGGTACAACATTGAATGTGGACAGAG
GAAGAAATAATAGCAGAGACAACGGAAAACGTGGAAAGTCAAGAAACAATAGAAGCAAGTCTAGAAACAGCAGACTAGAATGTTGGAATTGTTGTAAAATAGGACATCTG
AGGAGGAACTGCAAAGCCCCAAAGAAAGCTGAGGGGAAAGAAGCTGGAGAAATACATGCTGCTTTAGTTCTTGCAGTTGAGGGTGCTCATGACACATGGGTGGTGGATTC
AGGTGCGTCTTTTCACACTACAGGACAACGTGACATTCTTGAGAATTATGTTGCAGGAAATCATGGAAAGGTGTATCTTGCTGATGGAGAGCCTTTGGACATCATTGGGA
TTGGTGACGTTAATTTAAAAATGACGAACGGTTCAGTCTGGAAGATTCGCAAGGTACGTCAAGTTCAGAATATGATGAAGAACCTGATTTCCGTGGGGCAGCTGGATAAT
GAAGGATGTGAAATATCCTTTGGTCAAGGAAACTGGAAAGTTACAAAATTAAAGACAGAGTTAGATGGAAGCACAAAGAATACTCAGTATATAAGTCCTCTTGAGGTTGA
GACTAAACCAACAGAGATTGAAGATCATAATACAATTGCTCCTAAAGAAACAGTTGTGGAATTTGATGAACAAATTGAGGAATCTGATGAACCAGTTGTGGAAACTGATC
AGGTTCAGAAAACACCACCACCAACAGTTAGAATATCTAGTAGAACAATCAGACTACCACAGAGGGGAGTGGGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCATCCC
TCTTCTTCTTTGTGTTGGGGAAGAGAAGAAGGGGTTACAGAACAGAACAATAAGAAAGAAAAACCCACCAATTCTCTCTCAGATTTCTCTCAATCTCTCCCTCTCTTCAA
TCAAGGTGCTACCACTAGCACAATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAACTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAAGCGGACAATATCATACCATTGTGGAGATACGTGGGGTACCGTTGTCCTCAACAAGTGTTGGGAGCCTATGAAGGCAGCTATTTCAAATTCTTGTGGAAAAC
AGAAAAATTGAAATTCGCAGATGTCAGAGATGCAGCTCTTGGAGAGGAGATTCACAGAAAAGATTCTGGTATTGCGTCTACTTCTGGTACAACATTGAATGTGGACAGAG
GAAGAAATAATAGCAGAGACAACGGAAAACGTGGAAAGTCAAGAAACAATAGAAGCAAGTCTAGAAACAGCAGACTAGAATGTTGGAATTGTTGTAAAATAGGACATCTG
AGGAGGAACTGCAAAGCCCCAAAGAAAGCTGAGGGGAAAGAAGCTGGAGAAATACATGCTGCTTTAGTTCTTGCAGTTGAGGGTGCTCATGACACATGGGTGGTGGATTC
AGGTGCGTCTTTTCACACTACAGGACAACGTGACATTCTTGAGAATTATGTTGCAGGAAATCATGGAAAGGTGTATCTTGCTGATGGAGAGCCTTTGGACATCATTGGGA
TTGGTGACGTTAATTTAAAAATGACGAACGGTTCAGTCTGGAAGATTCGCAAGGTACGTCAAGTTCAGAATATGATGAAGAACCTGATTTCCGTGGGGCAGCTGGATAAT
GAAGGATGTGAAATATCCTTTGGTCAAGGAAACTGGAAAGTTACAAAATTAAAGACAGAGTTAGATGGAAGCACAAAGAATACTCAGTATATAAGTCCTCTTGAGGTTGA
GACTAAACCAACAGAGATTGAAGATCATAATACAATTGCTCCTAAAGAAACAGTTGTGGAATTTGATGAACAAATTGAGGAATCTGATGAACCAGTTGTGGAAACTGATC
AGGTTCAGAAAACACCACCACCAACAGTTAGAATATCTAGTAGAACAATCAGACTACCACAGAGGGGAGTGGGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCATCCC
TCTTCTTCTTTGTGTTGGGGAAGAGAAGAAGGGGTTACAGAACAGAACAATAAGAAAGAAAAACCCACCAATTCTCTCTCAGATTTCTCTCAATCTCTCCCTCTCTTCAA
TCAAGGTGCTACCACTAGCACAATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAACTCACTGA
Protein sequenceShow/hide protein sequence
MPKADNIIPLWRYVGYRCPQQVLGAYEGSYFKFLWKTEKLKFADVRDAALGEEIHRKDSGIASTSGTTLNVDRGRNNSRDNGKRGKSRNNRSKSRNSRLECWNCCKIGHL
RRNCKAPKKAEGKEAGEIHAALVLAVEGAHDTWVVDSGASFHTTGQRDILENYVAGNHGKVYLADGEPLDIIGIGDVNLKMTNGSVWKIRKVRQVQNMMKNLISVGQLDN
EGCEISFGQGNWKVTKLKTELDGSTKNTQYISPLEVETKPTEIEDHNTIAPKETVVEFDEQIEESDEPVVETDQVQKTPPPTVRISSRTIRLPQRGVGGFVTWGVTPRHP
SSSLCWGREEGVTEQNNKKEKPTNSLSDFSQSLPLFNQGATTSTIPRPKRIARKIRWWCSRGTH