CuGenDBv2

Gene ID	Moc07g04400
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr7:3788610..3789188
RNA-Seq Expression	Moc07g04400
Synteny	Moc07g04400
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0003824 - catalytic activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN60145.1 hypothetical protein VITISV_019412 [Vitis vinifera]

1.1e-32

47.7

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  I  E T  DLMKAL   YEKPS NNKV+L+++ FN+++ +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SL  SWETM++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

CAN60358.1 hypothetical protein VITISV_034722 [Vitis vinifera]

6.2e-33

47.7

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  I NE T  DLMKAL   YEKPS NNKV+L+++ FN+ + +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SL  SWE M++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

RVW31691.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

6.2e-33

47.13

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  +  E T  DLMKAL   YEKPS NNKV+L+++ FN+++ +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SLA SWE M++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

RVW44710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.1e-33

46.55

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS ++A  +  E T  DLMKAL + YEKPS NNKV+L+++ FN+++ KN SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SL  SWE M++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

RVW73171.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.1e-33

47.13

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  +  E T  DLMKAL   YEKPS NNKV+L+++ FN+++ +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SL  SWE M++VVSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

TrEMBL top hits

e value

%identity

Alignment

A0A0D3AEM1 CCHC-type domain-containing protein

1.3e-33

45.08

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Query:  MQIKDYLTCKKLNKALKERPGGM--KDWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHINE
        MQI+DYL  KKL++ L ++P  M   +W   + QV+  IRL LS NVA  +  E T   LMK L + YEKPS N+KV+L+++ F++++E+   V +HINE
Subjt:  MQIKDYLTCKKLNKALKERPGGM--KDWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHINE

Query:  VTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVEKCKRNLASDDR
           ++NQL+ V+I F DEV A+ LL SL  SWE+M++ VSNS+G + LKF+++ D ++AE++RR  SG+ STS   S   VE   RN   ++R
Subjt:  VTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVEKCKRNLASDDR

A0A0D3BM55 Uncharacterized protein

2.3e-33

45.08

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Query:  MQIKDYLTCKKLNKALKERPGGM--KDWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHINE
        MQ++DYL  KKL++ L ++P  M   +W   + QV+  IRL LS NVA  +A E T   LMK L + YEKPS NNKV+L+++ F++++E+   V +H+NE
Subjt:  MQIKDYLTCKKLNKALKERPGGM--KDWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHINE

Query:  VTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVEKCKRNLASDDR
           ++NQL+ V+I F DEV A+ LL SL  SWE M+  VSNS+G + LKF+++ D ++AE++RR  SG+ STS   S   VE   RN   ++R
Subjt:  VTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVEKCKRNLASDDR

A0A7N2KY95 Uncharacterized protein

2.3e-33

47.13

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  +  E T  DLMKAL   YEKPS NNKV+L+++ FN+++ +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ VKI F DE+ A+ +L SL  SWE M++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

A0A7N2LG47 Integrase catalytic domain-containing protein

1.8e-33

46.55

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L  +P  MK  +W   + QV+  IRL LS +VA  +  E T +DLMKAL   YEKPS NNKV+L+++ FN+++ +N +V  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS
        E   + NQL+ V+I F DE+ A+ +L SL  SWETM++ VSNS G++ LK+++I D ++AE+IRR+ +G+ S S
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTS

A0A7N2R8N6 Uncharacterized protein

1.8e-33

46.45

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Query:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN
        MQI+DYL  +KL+   L E+P  MK  +W   + QV+  IRL LS +VA  +  E T  DLMKAL   YEKPS NNKV+L+++ FN+++ +N SV  H+N
Subjt:  MQIKDYLTCKKLN-KALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHIN

Query:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVE
        E   + NQL+ V+I F DE+ A+ +L SL  SWE M++ VSNS G++ LK+++I D ++AE+IRR+ +G+  TS   S L +E
Subjt:  EVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.3e-12

29.34

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Query:  QIKDYLTCKKLNKAL---KERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHI
        +++D L  + L+K L    ++P  MK  DW + +E+  + IRL LS +V + I +E TA  +   LE+ Y   +  NK+YL ++ + + + + T+  SH+
Subjt:  QIKDYLTCKKLNKAL---KERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHI

Query:  NEVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRK
        N    LI QLA + +   +E  AI LL SL  S++ +   + +  G+  ++  ++  A++  +  RK
Subjt:  NEVTKLINQLAPVKITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRK

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

9.6e-08

42.86

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Query:  MQIKDYLTCKKLNKALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKV
        M+I+DYL  KKL++ L ++   M   DW     QV+  IRL +S N+A  +A E +   LMK L + Y+KPS NN V
Subjt:  MQIKDYLTCKKLNKALKERPGGMK--DWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKV

Sequences

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CDS sequence

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ATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCGGGAGGGATGAAAGATTGGGTAGAGACGAATGAACAGGTAGTTGCCTTTAT
CAGATTGTGTTTATCGATGAATGTGGCAAGTCTCATAGCAAACGAAACGACAGCAATAGATTTGATGAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGATAATAATA
AGGTATATCTCGTAAGGAGATTCTTTAACATTCAAATAGAAAAGAACACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCACCAGTTAAG
ATTACTTTTAGTGACGAAGTTACTGCTATTCAGTTGCTAACATCTTTAGCTGAAAGTTGGGAAACGATGAAGATAGTAGTGTCCAATTCGTTAGGAGAGAAATATTTGAA
ATTTTCAGAAATTTGTGATGCGGTAATTGCTGAACAAATTCGCAGAAAGGGGAGTGGAAAAGAATCTACTTCCACACAAGACTCAGAATTGGCTGTCGAAAAATGTAAAC
GGAATTTGGCGTCTGATGACAGGCAGTAG

mRNA sequence

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Protein sequence

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MQIKDYLTCKKLNKALKERPGGMKDWVETNEQVVAFIRLCLSMNVASLIANETTAIDLMKALENRYEKPSDNNKVYLVRRFFNIQIEKNTSVNSHINEVTKLINQLAPVK
ITFSDEVTAIQLLTSLAESWETMKIVVSNSLGEKYLKFSEICDAVIAEQIRRKGSGKESTSTQDSELAVEKCKRNLASDDRQ

Moc07g04400 (gene) of Bitter gourd (OHB3-1) v2 genome