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Moc07g04550 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g04550
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr7:3923950..3925194
RNA-Seq ExpressionMoc07g04550
SyntenyMoc07g04550
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]2.0e-1876.36Show/hide
Query:  VLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP
        V +++Q+HVG LD +WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  VLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]4.8e-0454.76Show/hide
Query:  MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR
        ME+  PE SWMDPI +FI+ N PQD K  +K++R+ ARF+ R
Subjt:  MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]3.4e-1856.79Show/hide
Query:  RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY
        R A +  RMAR+YNARV+ R F+   LVL++V  HVGAL+  WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]9.6e-2164.56Show/hide
Query:  ERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHP
        E+R+ A+ R A +  +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+ +WEGPFEVKGIVRPGTY+LADL+G +L+HP
Subjt:  ERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHP

XP_022156561.1 uncharacterized protein LOC111023436 [Momordica charantia]4.2e-1648.42Show/hide
Query:  KERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY
        +E R+ AR R A +  R+AR+YN++V+ R F+ G LVLR++  +      GA    WEGP++V  +VR GTY L D QG  L HPW+A+HLKRYY
Subjt:  KERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]8.9e-2766.29Show/hide
Query:  ERRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP
        +R     R      RMARHYN R++PR+FQVGHLV  ++Q+HVG LD +WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  ERRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A2N9F996 Ribonuclease H1.4e-1750.54Show/hide
Query:  RRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP
        R K   R  R+  +MARHYN++V+PR   +G LVLR+V         G L   WEGP++V  + RPGTY L D+ G  L+HPWNAEHL+RYYP
Subjt:  RRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP

A0A6J1CSJ1 Ribonuclease H9.7e-1976.36Show/hide
Query:  VLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP
        V +++Q+HVG LD +WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  VLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP

A0A6J1CSJ1 Ribonuclease H2.3e-0454.76Show/hide
Query:  MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR
        ME+  PE SWMDPI +FI+ N PQD K  +K++R+ ARF+ R
Subjt:  MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR

A0A6J1CSJ1 Ribonuclease H1.6e-1856.79Show/hide
Query:  RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY
        R A +  RMAR+YNARV+ R F+   LVL++V  HVGAL+  WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYY

A0A6J1DP99 uncharacterized protein K02A2.6-like4.6e-2164.56Show/hide
Query:  ERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHP
        E+R+ A+ R A +  +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+ +WEGPFEVKGIVRPGTY+LADL+G +L+HP
Subjt:  ERRKLAR-RAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHP

A0A6J1DXL9 uncharacterized protein LOC1110254484.3e-2766.29Show/hide
Query:  ERRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP
        +R     R      RMARHYN R++PR+FQVGHLV  ++Q+HVG LD +WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  ERRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEHLKRYYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGC
TCGGTTCGTGGGCAGAATGGCCAGACATTACAATGCTCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATTCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTACAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCAC
CTAAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGC
TCGGTTCGTGGGCAGAATGGCCAGACATTACAATGCTCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATTCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTACAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCAC
CTAAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDSAWEGPFEVKGIVRPGTYVLADLQGDVLAHPWNAEH
LKRYYP