; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g05220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g05220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr7:4404348..4405483
RNA-Seq ExpressionMoc07g05220
SyntenyMoc07g05220
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW55793.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.2e-1039.08Show/hide
Query:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILL
        +GLGS  K+  ++  ++ QNP +V+LQE K E+ DR  + S+W  + + W  L A G SGGI+I+W+   F+ S+  LG +++T+ L
Subjt:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILL

RVW75035.1 hypothetical protein CK203_053703 [Vitis vinifera]9.1e-1136.11Show/hide
Query:  MGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDIT
        MG    P+    S      + EY+GLGS  K+ ++K  ++ + P +V++QE K E  DR  + S+WS+R+  W  L ASG SGGILI+W+       ++ 
Subjt:  MGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDIT

Query:  LGLYTLTI
        LG ++++I
Subjt:  LGLYTLTI

RVX04307.1 Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]4.1e-1132.76Show/hide
Query:  WLNTMGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHV
        W   +G+  FP+          I    +GLGS +K+ ++K  +  +NP +V++QE K E+ DR  + S+W++R+  W  L ASG SGGILI+W+  +   
Subjt:  WLNTMGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHV

Query:  SDITLGLYTLTILLTL
         ++ LG +++++  +L
Subjt:  SDITLGLYTLTILLTL

RVX21543.1 hypothetical protein CK203_002039 [Vitis vinifera]6.9e-1141.05Show/hide
Query:  EYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGT
        + KGLGS +K+ ++K  +  QNP +V+ QE K EV DR  + S+WS R+  WT L A G SGGILI+W+       ++ +G +++++   LLDG+
Subjt:  EYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGT

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.2e-1751.58Show/hide
Query:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGTKF
        +GL SW K ALIK  I++ NP +VILQE KL  +D L +KSLWS+  I W+ LDASG + GILI+WNDP    +++  G+++LTI   L DG  F
Subjt:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGTKF

TrEMBL top hitse value%identityAlignment
A0A438F756 LINE-1 retrotransposable element ORF2 protein5.7e-1139.08Show/hide
Query:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILL
        +GLGS  K+  ++  ++ QNP +V+LQE K E+ DR  + S+W  + + W  L A G SGGI+I+W+   F+ S+  LG +++T+ L
Subjt:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILL

A0A438GS66 Uncharacterized protein4.4e-1136.11Show/hide
Query:  MGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDIT
        MG    P+    S      + EY+GLGS  K+ ++K  ++ + P +V++QE K E  DR  + S+WS+R+  W  L ASG SGGILI+W+       ++ 
Subjt:  MGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDIT

Query:  LGLYTLTI
        LG ++++I
Subjt:  LGLYTLTI

A0A438J5R7 Beta-arabinofuranosyltransferase RAY12.0e-1132.76Show/hide
Query:  WLNTMGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHV
        W   +G+  FP+          I    +GLGS +K+ ++K  +  +NP +V++QE K E+ DR  + S+W++R+  W  L ASG SGGILI+W+  +   
Subjt:  WLNTMGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHV

Query:  SDITLGLYTLTILLTL
         ++ LG +++++  +L
Subjt:  SDITLGLYTLTILLTL

A0A438KK26 Uncharacterized protein3.4e-1141.05Show/hide
Query:  EYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGT
        + KGLGS +K+ ++K  +  QNP +V+ QE K EV DR  + S+WS R+  WT L A G SGGILI+W+       ++ +G +++++   LLDG+
Subjt:  EYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGT

A0A6J1E2G6 uncharacterized protein LOC1110254051.1e-1751.58Show/hide
Query:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGTKF
        +GL SW K ALIK  I++ NP +VILQE KL  +D L +KSLWS+  I W+ LDASG + GILI+WNDP    +++  G+++LTI   L DG  F
Subjt:  KGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLTILLTLLDGTKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTCTTTTGGGACCGTACCAAAAACTTTCCTTTTTGGAGAAAGATAGCACACCTACCCACGAAAGGCACTCTGGTTTTTCTTCACCTCGCACCTGCCCCTGACAC
GTATAAACCCCACAACCCTTCTTTCTCACCTTTTGACTGTAACACATCGAGCCCTGAGCCTTTGACTGACACCCCTGCATTATTTGCTTTTCATCCCGCTGACATATGCC
ACCCACAAAGTCCCATCACTTCTGTACCCCTACATAACGCAGGCCCATCATCCTCTTCTATCACCCCTGCCCTTCACACTCAACCCCTATCCTTACACACTTTACCACTA
CCTACTGACTCACTTCCCCCCGATCCTGTTCCACACCCTACGCTTCTCTTGGATGGCCCAAAATTAGCCATTAATATCGCAGAAAAAGAAACCTACCTAGCATTGGGCAC
AAAACACTCCACCAATCCCCTCGAACTGCTTTCTGACTTTGATCAATGTATCTCCAATCCCTACCCCCTATCCACTGAACCCCCCTCCCCAACTTTCTCCTCACACTTGA
TTGAGGGTCCTACTCCCCACCCTATAGCTCCAGATGTAACACACACTACCCCTTTTCCTTTTGACCCCGCCGTCCACCCTTCTTCTTACCTGCAGGTGGTTGTTCCATGG
CTCAACACTATGGGCACGGGTATCTTTCCCATTCTCACTAAACTCTCTAAGAAAGCTACATCGATCCGGAAGGAATACAAAGGTCTTGGCTCATGGAGCAAGAAAGCGCT
GATAAAGACCCTCATCAACAAACAAAACCCCACCATTGTCATCCTCCAAGAAATCAAGCTCGAAGTGGTAGATCGTCTCACTATTAAATCACTTTGGAGCTCTCGTGATA
TTGGCTGGACTACTTTAGACGCATCGGGCACATCAGGGGGTATTCTTATTATGTGGAATGACCCTTCTTTTCACGTTTCTGATATAACCTTGGGACTCTACACACTAACC
ATTCTTCTTACCCTTCTTGATGGTACTAAATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTCTTTTGGGACCGTACCAAAAACTTTCCTTTTTGGAGAAAGATAGCACACCTACCCACGAAAGGCACTCTGGTTTTTCTTCACCTCGCACCTGCCCCTGACAC
GTATAAACCCCACAACCCTTCTTTCTCACCTTTTGACTGTAACACATCGAGCCCTGAGCCTTTGACTGACACCCCTGCATTATTTGCTTTTCATCCCGCTGACATATGCC
ACCCACAAAGTCCCATCACTTCTGTACCCCTACATAACGCAGGCCCATCATCCTCTTCTATCACCCCTGCCCTTCACACTCAACCCCTATCCTTACACACTTTACCACTA
CCTACTGACTCACTTCCCCCCGATCCTGTTCCACACCCTACGCTTCTCTTGGATGGCCCAAAATTAGCCATTAATATCGCAGAAAAAGAAACCTACCTAGCATTGGGCAC
AAAACACTCCACCAATCCCCTCGAACTGCTTTCTGACTTTGATCAATGTATCTCCAATCCCTACCCCCTATCCACTGAACCCCCCTCCCCAACTTTCTCCTCACACTTGA
TTGAGGGTCCTACTCCCCACCCTATAGCTCCAGATGTAACACACACTACCCCTTTTCCTTTTGACCCCGCCGTCCACCCTTCTTCTTACCTGCAGGTGGTTGTTCCATGG
CTCAACACTATGGGCACGGGTATCTTTCCCATTCTCACTAAACTCTCTAAGAAAGCTACATCGATCCGGAAGGAATACAAAGGTCTTGGCTCATGGAGCAAGAAAGCGCT
GATAAAGACCCTCATCAACAAACAAAACCCCACCATTGTCATCCTCCAAGAAATCAAGCTCGAAGTGGTAGATCGTCTCACTATTAAATCACTTTGGAGCTCTCGTGATA
TTGGCTGGACTACTTTAGACGCATCGGGCACATCAGGGGGTATTCTTATTATGTGGAATGACCCTTCTTTTCACGTTTCTGATATAACCTTGGGACTCTACACACTAACC
ATTCTTCTTACCCTTCTTGATGGTACTAAATTCTAG
Protein sequenceShow/hide protein sequence
MRVFWDRTKNFPFWRKIAHLPTKGTLVFLHLAPAPDTYKPHNPSFSPFDCNTSSPEPLTDTPALFAFHPADICHPQSPITSVPLHNAGPSSSSITPALHTQPLSLHTLPL
PTDSLPPDPVPHPTLLLDGPKLAINIAEKETYLALGTKHSTNPLELLSDFDQCISNPYPLSTEPPSPTFSSHLIEGPTPHPIAPDVTHTTPFPFDPAVHPSSYLQVVVPW
LNTMGTGIFPILTKLSKKATSIRKEYKGLGSWSKKALIKTLINKQNPTIVILQEIKLEVVDRLTIKSLWSSRDIGWTTLDASGTSGGILIMWNDPSFHVSDITLGLYTLT
ILLTLLDGTKF