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Moc07g05280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g05280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLINE-1 reverse transcriptase-like
Genome locationchr7:4440411..4445001
RNA-Seq ExpressionMoc07g05280
SyntenyMoc07g05280
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]2.6e-2143.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+ + G  KSP PD                                G+TNET++CL+P+K  + KVTDF  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +   +KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

BBN69274.1 TatD related DNase [Prunus dulcis]2.6e-2143.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+ + G  KSP PD                                G+TNET++CL+P+K  + KVTDF  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +   +KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

PRQ36601.1 putative RNA-directed DNA polymerase [Rosa chinensis]1.6e-2339.22Show/hide
Query:  LVNNDDPLTPEVINEIWKNKEVEAEKL-------------VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDG---------------------------
        +V  ++ L  E I   +KN     E++             VEK+R LE+P  EEEI  A+     +KSP PDG                           
Subjt:  LVNNDDPLTPEVINEIWKNKEVEAEKL-------------VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDG---------------------------

Query:  -----ITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKA
             +TNETY+CL+P+K  + KV D+  ISLITSLYK+I KVLA RLR++L       Q AF++G  I DA+LVA EVV E +  KK+G + K+DFEKA
Subjt:  -----ITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKA

Query:  YDMI
        YD +
Subjt:  YDMI

RVW99186.1 LINE-1 reverse transcriptase-like [Vitis vinifera]2.0e-2140.44Show/hide
Query:  EKCEIINVWSEFEYDEPELLVNNDDPLTPEVINEIWKNKEVEAEKL----VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGI-TNETYLCLVPRKLKT
        ++ +I  VW   E +  E +VN    L  E     WK  ++E   L     +++ +LE P SE+EIH+A+ ++   K+P PDG+  N T+L L+P+K   
Subjt:  EKCEIINVWSEFEYDEPELLVNNDDPLTPEVINEIWKNKEVEAEKL----VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGI-TNETYLCLVPRKLKT

Query:  NKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
          + DF  ISL+  LYK++ KVLA RL+K+L       Q AFV+G  I DA L+A EV+  W+  K+KG + KLD EKAYD I
Subjt:  NKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

VVA31869.1 Hypothetical predicted protein, partial [Prunus dulcis]2.6e-2143.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+ + G  KSP PD                                G+TNET++CL+P+K  + KVTDF  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +   +KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

TrEMBL top hitse value%identityAlignment
A0A2P6QQZ3 Putative RNA-directed DNA polymerase7.7e-2439.22Show/hide
Query:  LVNNDDPLTPEVINEIWKNKEVEAEKL-------------VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDG---------------------------
        +V  ++ L  E I   +KN     E++             VEK+R LE+P  EEEI  A+     +KSP PDG                           
Subjt:  LVNNDDPLTPEVINEIWKNKEVEAEKL-------------VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDG---------------------------

Query:  -----ITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKA
             +TNETY+CL+P+K  + KV D+  ISLITSLYK+I KVLA RLR++L       Q AF++G  I DA+LVA EVV E +  KK+G + K+DFEKA
Subjt:  -----ITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKA

Query:  YDMI
        YD +
Subjt:  YDMI

A0A438IR55 LINE-1 reverse transcriptase-like9.5e-2240.44Show/hide
Query:  EKCEIINVWSEFEYDEPELLVNNDDPLTPEVINEIWKNKEVEAEKL----VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGI-TNETYLCLVPRKLKT
        ++ +I  VW   E +  E +VN    L  E     WK  ++E   L     +++ +LE P SE+EIH+A+ ++   K+P PDG+  N T+L L+P+K   
Subjt:  EKCEIINVWSEFEYDEPELLVNNDDPLTPEVINEIWKNKEVEAEKL----VEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGI-TNETYLCLVPRKLKT

Query:  NKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
          + DF  ISL+  LYK++ KVLA RL+K+L       Q AFV+G  I DA L+A EV+  W+  K+KG + KLD EKAYD I
Subjt:  NKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

M5WKV4 Reverse transcriptase domain-containing protein (Fragment)9.5e-2243.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+   G  KSP PD                                G+TNET++CL+P+K  + KVTD+  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +  K+KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

M5WPQ5 Reverse transcriptase domain-containing protein7.2e-2243.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+ + G  KSP PD                                G+TNET++CL+P+K  + KVTD+  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +  K+KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)7.2e-2243.04Show/hide
Query:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE
        LE P   EE+  A+ + G  KSP PD                                G+TNET++CL+P+K  + KVTD+  ISL+TSLYKVI+KVLA 
Subjt:  LESPLSEEEIHTAIRNLGNLKSPSPD--------------------------------GITNETYLCLVPRKLKTNKVTDFCTISLITSLYKVITKVLAE

Query:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
        RLR++L       Q AFV+   I DA+LVA EVV E +  K+KG + K+DFEKAYD +
Subjt:  RLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein5.7e-0824.73Show/hide
Query:  DPLTPEVINEIWKNKEVEAEKLVEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGITNETY--------------------------------LCLVPRK
        DP++P+   E+W    V +E+  E+   LE+P++ +E+  A+R + + KSP  DG+T E +                                L L+P+K
Subjt:  DPLTPEVINEIWKNKEVEAEKLVEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGITNETY--------------------------------LCLVPRK

Query:  LKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI
             + ++  +SL+++ YK++ K ++ RL+ +L       Q+  V G  IFD + +  +++   +        L LD EKA+D +
Subjt:  LKTNKVTDFCTISLITSLYKVITKVLAERLRKIL-------QAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAAATGTGAGATAATCAATGTATGGAGCGAGTTTGAATACGACGAACCTGAGCTTCTAGTGAACAACGATGATCCACTAACCCCTGAAGTGATAAACGAGAT
ATGGAAGAATAAGGAAGTTGAAGCCGAGAAACTGGTTGAGAAGAGCCGTGATTTGGAATCCCCTCTCAGCGAAGAGGAAATCCATACTGCTATACGAAATTTGGGAAATT
TGAAGTCACCCAGCCCGGATGGAATAACTAATGAGACTTACCTTTGCCTTGTTCCTAGGAAGTTGAAAACCAACAAAGTCACCGATTTCTGCACAATTAGTTTGATCACT
TCCCTGTACAAGGTCATTACCAAAGTTCTAGCGGAAAGACTTCGGAAAATTCTACAGGCAGCTTTTGTGGAAGGCATGAATATTTTTGATGCAATTCTGGTTGCTCCAGA
GGTCGTTGGGGAATGGAAAGCAAACAAGAAGAAAGGTTACCTCCTAAAATTAGACTTCGAAAAGGCTTATGATATGATAAGGTCGACGACAGTTTGGCCGAAGCAGGAGA
CAAAGCATGAAGAGAGTGCTAGGCCTAGAGAAGAGTTAATGAAACATCTTCAACCTATTCCACCGAATGTGAGGATTGAGGAAATAGTAGACCGGGTTCCTGTTGCTGCT
AACCCTGAGGTAGCAGTACCACCTCTCAATGTTGTATTACTGGCAGATGACATCGACAGAGAAATCAGGGCGTATGCAGCTCTGACATTTTATAATTTCAACCCAGTAAT
CATGGAGCTGAAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGAAATGTGAGATAATCAATGTATGGAGCGAGTTTGAATACGACGAACCTGAGCTTCTAGTGAACAACGATGATCCACTAACCCCTGAAGTGATAAACGAGAT
ATGGAAGAATAAGGAAGTTGAAGCCGAGAAACTGGTTGAGAAGAGCCGTGATTTGGAATCCCCTCTCAGCGAAGAGGAAATCCATACTGCTATACGAAATTTGGGAAATT
TGAAGTCACCCAGCCCGGATGGAATAACTAATGAGACTTACCTTTGCCTTGTTCCTAGGAAGTTGAAAACCAACAAAGTCACCGATTTCTGCACAATTAGTTTGATCACT
TCCCTGTACAAGGTCATTACCAAAGTTCTAGCGGAAAGACTTCGGAAAATTCTACAGGCAGCTTTTGTGGAAGGCATGAATATTTTTGATGCAATTCTGGTTGCTCCAGA
GGTCGTTGGGGAATGGAAAGCAAACAAGAAGAAAGGTTACCTCCTAAAATTAGACTTCGAAAAGGCTTATGATATGATAAGGTCGACGACAGTTTGGCCGAAGCAGGAGA
CAAAGCATGAAGAGAGTGCTAGGCCTAGAGAAGAGTTAATGAAACATCTTCAACCTATTCCACCGAATGTGAGGATTGAGGAAATAGTAGACCGGGTTCCTGTTGCTGCT
AACCCTGAGGTAGCAGTACCACCTCTCAATGTTGTATTACTGGCAGATGACATCGACAGAGAAATCAGGGCGTATGCAGCTCTGACATTTTATAATTTCAACCCAGTAAT
CATGGAGCTGAAATTGTAG
Protein sequenceShow/hide protein sequence
MEEKCEIINVWSEFEYDEPELLVNNDDPLTPEVINEIWKNKEVEAEKLVEKSRDLESPLSEEEIHTAIRNLGNLKSPSPDGITNETYLCLVPRKLKTNKVTDFCTISLIT
SLYKVITKVLAERLRKILQAAFVEGMNIFDAILVAPEVVGEWKANKKKGYLLKLDFEKAYDMIRSTTVWPKQETKHEESARPREELMKHLQPIPPNVRIEEIVDRVPVAA
NPEVAVPPLNVVLLADDIDREIRAYAALTFYNFNPVIMELKL